Variant report

Variant	rs4244322
Chromosome Location	chr10:99336388-99336389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99329733..99337149-chr10:99338392..99346753,19	MCF-7	breast:
2	chr10:99333671..99336639-chr10:99408320..99410860,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241935	Chromatin interaction
ENSG00000249967	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10748702	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10748703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748704	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748705	0.85[EUR][1000 genomes]
rs10786357	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882958	0.85[EUR][1000 genomes]
rs1417409	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2153546	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2185512	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2861969	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4244324	0.88[AFR][1000 genomes]
rs4917775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4919110	1.00[CEU][hapmap]
rs4919111	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4919112	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4919114	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs55831446	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57607476	1.00[ASN][1000 genomes]
rs6584135	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6584136	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7074782	0.92[EUR][1000 genomes]
rs7074898	0.92[EUR][1000 genomes]
rs7077652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7097951	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs73332755	1.00[ASN][1000 genomes]
rs74155506	1.00[ASN][1000 genomes]
rs7919450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99331000-99337200	Enhancers	Fetal Heart	heart
2	chr10:99332600-99338200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:99334200-99336400	Enhancers	Left Ventricle	heart
4	chr10:99334600-99338200	Weak transcription	Lung	lung
5	chr10:99334800-99343400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:99335000-99337600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:99335000-99337800	Enhancers	A549	lung
8	chr10:99335000-99338000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:99335000-99338000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:99335000-99343400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:99335200-99343400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:99335400-99337800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr10:99335400-99340200	Weak transcription	Pancreas	Pancrea
14	chr10:99336000-99338200	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:99336000-99342000	Weak transcription	Right Ventricle	heart
16	chr10:99336000-99348800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr10:99336200-99336400	Enhancers	HSMMtube	muscle
18	chr10:99336200-99337200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr10:99336200-99338000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:99336200-99339800	Weak transcription	Hela-S3	cervix
21	chr10:99336200-99340200	Weak transcription	Placenta	Placenta
22	chr10:99336200-99340800	Weak transcription	Right Atrium	heart
23	chr10:99336200-99342000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:99336200-99343400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:99336200-99343400	Weak transcription	Psoas Muscle	Psoas

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