Variant report

Variant	rs10882958
Chromosome Location	chr10:99301640-99301641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99300634..99304686-chr10:99330230..99333325,5	MCF-7	breast:
2	chr10:99255227..99260148-chr10:99300104..99304804,10	MCF-7	breast:
3	chr10:99297050..99299012-chr10:99300542..99302143,2	MCF-7	breast:
4	chr10:99275210..99277389-chr10:99300331..99302181,2	MCF-7	breast:
5	chr10:99301268..99303688-chr10:99312791..99314821,3	MCF-7	breast:
6	chr10:99222672..99224790-chr10:99301444..99303032,2	MCF-7	breast:
7	chr10:99204024..99206698-chr10:99300506..99302112,2	MCF-7	breast:
8	chr10:99296911..99299412-chr10:99301338..99303433,2	K562	blood:
9	chr10:99300462..99303898-chr10:99329826..99332488,8	MCF-7	breast:
10	chr10:99299652..99304961-chr10:99307189..99311108,10	MCF-7	breast:
11	chr10:99256059..99259971-chr10:99300252..99304004,11	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000165886	Chromatin interaction
ENSG00000165887	Chromatin interaction
ENSG00000155229	Chromatin interaction
ENSG00000171311	Chromatin interaction
ENSG00000171307	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10786357	0.85[EUR][1000 genomes]
rs11189254	0.81[ASN][1000 genomes]
rs12245837	0.88[ASN][1000 genomes]
rs12259524	0.88[ASN][1000 genomes]
rs12263319	0.88[ASN][1000 genomes]
rs12263477	0.83[ASN][1000 genomes]
rs1417409	0.85[EUR][1000 genomes]
rs17108072	0.88[ASN][1000 genomes]
rs17108087	0.88[ASN][1000 genomes]
rs17108114	0.93[ASN][1000 genomes]
rs2153545	0.88[ASN][1000 genomes]
rs2153546	0.85[EUR][1000 genomes]
rs2275588	0.93[ASN][1000 genomes]
rs35311829	0.93[ASN][1000 genomes]
rs4244322	0.85[EUR][1000 genomes]
rs4244323	0.82[ASN][1000 genomes]
rs4917775	0.85[EUR][1000 genomes]
rs4919110	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4919111	0.85[EUR][1000 genomes]
rs58336429	0.81[ASN][1000 genomes]
rs59951048	0.88[ASN][1000 genomes]
rs60730732	0.81[ASN][1000 genomes]
rs7077096	0.88[ASN][1000 genomes]
rs7081548	0.85[EUR][1000 genomes]
rs7912825	0.93[ASN][1000 genomes]
rs7922873	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	esv992861	chr10:99298852-99305974	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99277800-99301800	Weak transcription	Gastric	stomach
2	chr10:99278000-99302600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr10:99278400-99301800	Weak transcription	Spleen	Spleen
4	chr10:99281400-99302200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:99282200-99301800	Weak transcription	Pancreas	Pancrea
6	chr10:99293200-99301800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:99294400-99301800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:99295400-99302400	Weak transcription	Fetal Intestine Small	intestine
9	chr10:99297200-99303600	Enhancers	Placenta	Placenta
10	chr10:99297400-99302200	Enhancers	HSMMtube	muscle
11	chr10:99297800-99301800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr10:99297800-99301800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:99297800-99301800	Enhancers	Osteobl	bone
14	chr10:99297800-99302800	Enhancers	NH-A	brain
15	chr10:99298200-99301800	Enhancers	A549	lung
16	chr10:99298200-99301800	Enhancers	HSMM	muscle
17	chr10:99298200-99301800	Enhancers	NHDF-Ad	bronchial
18	chr10:99298200-99301800	Enhancers	NHLF	lung
19	chr10:99298200-99302400	Enhancers	HMEC	breast
20	chr10:99298200-99302600	Enhancers	Adipose Nuclei	Adipose
21	chr10:99298200-99302800	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr10:99298200-99302800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr10:99298200-99302800	Enhancers	HUVEC	blood vessel
24	chr10:99298200-99304200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:99298200-99304200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:99298200-99304200	Enhancers	Brain Hippocampus Middle	brain
27	chr10:99298400-99302800	Enhancers	Brain Angular Gyrus	brain
28	chr10:99298400-99303600	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr10:99298400-99304000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr10:99298400-99304400	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr10:99298600-99303800	Enhancers	Fetal Muscle Trunk	muscle
32	chr10:99298600-99304000	Enhancers	Fetal Muscle Leg	muscle
33	chr10:99299400-99304200	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr10:99299800-99301800	Weak transcription	K562	blood
35	chr10:99299800-99302200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr10:99299800-99302800	Weak transcription	Fetal Heart	heart
37	chr10:99300000-99302000	Weak transcription	Fetal Stomach	stomach
38	chr10:99300200-99301800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr10:99300200-99301800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:99300200-99302400	Weak transcription	Fetal Thymus	thymus
41	chr10:99300400-99301800	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr10:99300400-99301800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr10:99300400-99301800	Weak transcription	Colon Smooth Muscle	Colon
44	chr10:99300400-99302400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:99300600-99301800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:99300600-99301800	Weak transcription	Aorta	Aorta
47	chr10:99300600-99301800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr10:99300600-99302600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr10:99300600-99306600	Weak transcription	Fetal Kidney	kidney
50	chr10:99300600-99309200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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