Variant report

Variant	rs17108114
Chromosome Location	chr10:99341390-99341391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99341160..99342712-chr10:99360184..99361949,2	MCF-7	breast:
2	chr10:99329733..99337149-chr10:99338392..99346753,19	MCF-7	breast:
3	chr10:99331113..99332849-chr10:99340895..99343387,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165887	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10882958	0.93[ASN][1000 genomes]
rs11189254	1.00[JPT][hapmap]
rs12245837	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12259524	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12263319	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12263477	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17107905	1.00[JPT][hapmap]
rs17108072	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17108087	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17112803	1.00[JPT][hapmap]
rs2153545	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2275588	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs35311829	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3814552	1.00[JPT][hapmap]
rs4244323	0.84[ASN][1000 genomes]
rs4919110	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs59951048	0.86[ASN][1000 genomes]
rs7077096	0.86[ASN][1000 genomes]
rs7897051	0.85[CHB][hapmap]
rs7897232	0.82[CHB][hapmap]
rs7912825	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922873	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
4	nsv818782	chr10:99337572-99350128	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv971896	chr10:99338341-99349551	Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99334800-99343400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:99335000-99343400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:99335200-99343400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:99336000-99342000	Weak transcription	Right Ventricle	heart
5	chr10:99336000-99348800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:99336200-99342000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:99336200-99343400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:99336200-99343400	Weak transcription	Psoas Muscle	Psoas
9	chr10:99337800-99343000	Weak transcription	A549	lung
10	chr10:99338400-99343400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:99338400-99343800	Weak transcription	Lung	lung
12	chr10:99338600-99343800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:99338800-99343200	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:99338800-99343400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:99340000-99343000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
16	chr10:99340000-99343600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
17	chr10:99340400-99341400	Enhancers	Fetal Muscle Trunk	muscle
18	chr10:99340400-99344400	Weak transcription	Pancreas	Pancrea
19	chr10:99340600-99343600	Weak transcription	Placenta	Placenta
20	chr10:99340600-99343600	Weak transcription	Hela-S3	cervix
21	chr10:99340800-99341400	Enhancers	Adipose Nuclei	Adipose
22	chr10:99341000-99341400	Enhancers	Left Ventricle	heart
23	chr10:99341200-99343400	Weak transcription	Right Atrium	heart

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