Variant report

Variant	rs17108072
Chromosome Location	chr10:99313667-99313668
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99312057..99313792-chr10:99332151..99333751,2	MCF-7	breast:
2	chr10:99223105..99224199-chr10:99313315..99313877,3	K562	blood:
3	chr10:99301268..99303688-chr10:99312791..99314821,3	MCF-7	breast:
4	chr10:99313367..99313870-chr10:99331720..99332464,2	MCF-7	breast:
5	chr10:99223115..99224039-chr10:99312943..99313970,3	MCF-7	breast:
6	chr10:99293924..99295180-chr10:99312973..99313927,7	MCF-7	breast:
7	chr10:99294357..99295108-chr10:99313347..99313880,2	K562	blood:
8	chr10:99312973..99313822-chr10:99372040..99372690,2	MCF-7	breast:
9	chr10:99311940..99314624-chr10:99329998..99332096,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000165887	Chromatin interaction
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10882958	0.88[ASN][1000 genomes]
rs11189254	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12245837	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12259524	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12263319	1.00[ASN][1000 genomes]
rs12263477	0.95[ASN][1000 genomes]
rs17107905	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17108087	1.00[ASN][1000 genomes]
rs17108114	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17112803	1.00[JPT][hapmap]
rs1889545	0.82[JPT][hapmap]
rs2153545	1.00[ASN][1000 genomes]
rs2275588	0.88[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs35311829	0.86[ASN][1000 genomes]
rs3814552	1.00[JPT][hapmap]
rs4418736	0.82[JPT][hapmap]
rs4919098	0.82[JPT][hapmap]
rs4919110	0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs58336429	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59951048	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60730732	0.93[ASN][1000 genomes]
rs7077096	1.00[ASN][1000 genomes]
rs7897051	0.88[CHB][hapmap]
rs7897232	0.86[CHB][hapmap]
rs7912825	0.88[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs7922873	1.00[ASN][1000 genomes]
rs928604	0.82[JPT][hapmap]
rs964733	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99303000-99327600	Weak transcription	Aorta	Aorta
2	chr10:99303200-99327600	Weak transcription	Pancreas	Pancrea
3	chr10:99303800-99327800	Weak transcription	Ovary	ovary
4	chr10:99309800-99316200	Weak transcription	Liver	Liver
5	chr10:99310400-99327600	Weak transcription	Lung	lung
6	chr10:99310400-99327800	Weak transcription	Right Ventricle	heart
7	chr10:99310800-99320600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:99310800-99326400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:99310800-99327600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:99310800-99327600	Weak transcription	Spleen	Spleen
11	chr10:99311400-99327600	Weak transcription	Left Ventricle	heart
12	chr10:99311400-99328800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:99312200-99314000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:99312800-99313800	Enhancers	Brain Hippocampus Middle	brain
15	chr10:99312800-99313800	Enhancers	NHEK	skin
16	chr10:99312800-99314000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:99312800-99314200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr10:99313000-99313800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:99313000-99313800	Enhancers	Fetal Muscle Trunk	muscle
20	chr10:99313000-99313800	Enhancers	Stomach Smooth Muscle	stomach
21	chr10:99313000-99314000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr10:99313200-99313800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:99313200-99313800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:99313200-99313800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr10:99313200-99313800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:99313200-99313800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr10:99313200-99313800	Enhancers	Adipose Nuclei	Adipose
28	chr10:99313200-99313800	Enhancers	Brain Angular Gyrus	brain
29	chr10:99313200-99313800	Enhancers	Brain Anterior Caudate	brain
30	chr10:99313200-99313800	Enhancers	Brain Cingulate Gyrus	brain
31	chr10:99313200-99313800	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr10:99313200-99313800	Enhancers	Brain Substantia Nigra	brain
33	chr10:99313200-99313800	Enhancers	Colon Smooth Muscle	Colon
34	chr10:99313200-99313800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr10:99313200-99313800	Enhancers	Fetal Muscle Leg	muscle
36	chr10:99313200-99313800	Enhancers	Fetal Stomach	stomach
37	chr10:99313200-99313800	Enhancers	HMEC	breast
38	chr10:99313200-99313800	Enhancers	HUVEC	blood vessel
39	chr10:99313200-99313800	Enhancers	NH-A	brain
40	chr10:99313200-99313800	Enhancers	NHDF-Ad	bronchial
41	chr10:99313200-99313800	Enhancers	NHLF	lung
42	chr10:99313200-99313800	Enhancers	Osteobl	bone
43	chr10:99313200-99314000	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr10:99313200-99314000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:99313200-99314000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:99313200-99314000	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr10:99313200-99314000	Enhancers	A549	lung
48	chr10:99313200-99314000	Enhancers	HepG2	liver
49	chr10:99313200-99314200	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr10:99313200-99314200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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