Variant report

Variant	rs11189254
Chromosome Location	chr10:99283609-99283610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99271315..99274212-chr10:99282293..99285243,2	K562	blood:
2	chr10:99256542..99259693-chr10:99280360..99283727,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155229	Chromatin interaction
ENSG00000165886	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10882958	0.81[ASN][1000 genomes]
rs11189230	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11189236	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11189237	0.87[EUR][1000 genomes]
rs11189242	0.87[EUR][1000 genomes]
rs11189283	1.00[CEU][hapmap]
rs12245837	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12259524	0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12263319	0.87[ASN][1000 genomes]
rs12263477	0.83[ASN][1000 genomes]
rs12356581	0.87[EUR][1000 genomes]
rs12357653	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12360068	0.82[EUR][1000 genomes]
rs17107905	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17108072	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17108087	0.87[ASN][1000 genomes]
rs17108114	1.00[JPT][hapmap]
rs17112803	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17112837	0.87[ASN][1000 genomes]
rs1889545	0.82[JPT][hapmap];1.00[YRI][hapmap]
rs2153545	0.87[ASN][1000 genomes]
rs2275588	0.82[JPT][hapmap]
rs2861953	1.00[YRI][hapmap]
rs29001266	0.82[ASN][1000 genomes]
rs3381	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs3814552	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs4418736	0.82[JPT][hapmap];1.00[YRI][hapmap]
rs4919098	0.82[JPT][hapmap]
rs4919110	1.00[JPT][hapmap]
rs58336429	0.81[ASN][1000 genomes]
rs59951048	0.87[ASN][1000 genomes]
rs60730732	0.81[ASN][1000 genomes]
rs7077096	0.87[ASN][1000 genomes]
rs7089713	0.82[CHB][hapmap]
rs7897232	0.85[CHB][hapmap]
rs7912825	0.82[JPT][hapmap]
rs7922873	0.87[ASN][1000 genomes]
rs928604	0.82[JPT][hapmap]
rs946984	0.82[CHB][hapmap]
rs946987	0.82[CHB][hapmap]
rs964733	0.82[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99270800-99286200	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr10:99274200-99285000	Enhancers	Right Ventricle	heart
3	chr10:99275000-99293800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:99276000-99284400	Weak transcription	HepG2	liver
5	chr10:99277800-99301800	Weak transcription	Gastric	stomach
6	chr10:99278000-99302600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr10:99278200-99298800	Weak transcription	Aorta	Aorta
8	chr10:99278400-99289600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:99278400-99301800	Weak transcription	Spleen	Spleen
10	chr10:99278600-99284400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:99278600-99300200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:99278800-99284400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:99279000-99284400	Weak transcription	Ovary	ovary
14	chr10:99279400-99284600	Weak transcription	Adipose Nuclei	Adipose
15	chr10:99279600-99284000	Enhancers	Right Atrium	heart
16	chr10:99279800-99283800	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:99279800-99284600	Weak transcription	Brain Angular Gyrus	brain
18	chr10:99279800-99287200	Enhancers	Lung	lung
19	chr10:99280200-99284600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:99281200-99291400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr10:99281400-99302200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr10:99282200-99283800	Weak transcription	Psoas Muscle	Psoas
23	chr10:99282200-99284400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr10:99282200-99284400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr10:99282200-99289400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:99282200-99289600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr10:99282200-99301800	Weak transcription	Pancreas	Pancrea
28	chr10:99282400-99284400	Weak transcription	Brain Substantia Nigra	brain
29	chr10:99282400-99291200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:99282400-99298200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:99282600-99284400	Weak transcription	Brain Anterior Caudate	brain
32	chr10:99282800-99284400	Weak transcription	Esophagus	oesophagus
33	chr10:99282800-99292800	Weak transcription	HSMMtube	muscle
34	chr10:99282800-99299400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:99283000-99284400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr10:99283000-99284600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr10:99283200-99284400	Weak transcription	Left Ventricle	heart
38	chr10:99283600-99283800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:99283600-99284000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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