Variant report

Variant	rs3381
Chromosome Location	chr10:99241138-99241139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr10:99240716-99241188	MCF10A-Er-Src	breast:	n/a	n/a
2	MYC	chr10:99240790-99241186	MCF10A-Er-Src	breast:	n/a	chr10:99241027-99241038
3	FOS	chr10:99240692-99241192	MCF10A-Er-Src	breast:	n/a	n/a
4	MYC	chr10:99240760-99241224	MCF10A-Er-Src	breast:	n/a	chr10:99241027-99241038
5	MAX	chr10:99240660-99241319	Hela-S3	cervix:	n/a	chr10:99241027-99241038
6	JUND	chr10:99240612-99241260	T-47D	breast:	n/a	n/a
7	STAT3	chr10:99240758-99241181	MCF10A-Er-Src	breast:	n/a	n/a
8	STAT3	chr10:99240794-99241154	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr10:99240714-99241167	MCF10A-Er-Src	breast:	n/a	n/a
10	FOS	chr10:99240715-99241239	MCF10A-Er-Src	breast:	n/a	n/a
11	CEBPB	chr10:99240972-99241256	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000264677	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11189230	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11189236	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189254	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11189283	1.00[CEU][hapmap]
rs12356581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12357653	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12360068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99210000-99243800	Strong transcription	Primary T cells from cord blood	blood
2	chr10:99210000-99243800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr10:99210000-99244000	Strong transcription	Fetal Stomach	stomach
4	chr10:99210000-99244200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:99210200-99243800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:99210400-99243600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr10:99210400-99244800	Strong transcription	Fetal Thymus	thymus
8	chr10:99210600-99241800	Strong transcription	Thymus	Thymus
9	chr10:99210600-99243800	Strong transcription	Duodenum Mucosa	Duodenum
10	chr10:99210600-99244200	Strong transcription	Placenta	Placenta
11	chr10:99210800-99243800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:99210800-99244000	Strong transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:99210800-99246000	Strong transcription	Primary B cells from peripheral blood	blood
14	chr10:99211000-99243800	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr10:99211000-99246400	Strong transcription	Dnd41	blood
16	chr10:99211200-99244800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:99211200-99246200	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr10:99211200-99246600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:99211400-99241600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr10:99211800-99241200	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr10:99214400-99242000	Strong transcription	Fetal Muscle Trunk	muscle
22	chr10:99214400-99246400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr10:99214600-99242800	Strong transcription	Fetal Muscle Leg	muscle
24	chr10:99214600-99243800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr10:99214600-99243800	Strong transcription	Stomach Smooth Muscle	stomach
26	chr10:99214800-99243800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:99215200-99242400	Strong transcription	Left Ventricle	heart
28	chr10:99215200-99243800	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr10:99215400-99243800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:99215400-99254600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr10:99216800-99243800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:99217800-99242000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
33	chr10:99218200-99244000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:99224200-99245000	Strong transcription	Fetal Intestine Small	intestine
35	chr10:99224400-99244800	Strong transcription	Fetal Intestine Large	intestine
36	chr10:99225400-99242000	Strong transcription	Brain Substantia Nigra	brain
37	chr10:99227600-99246600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:99229600-99242200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:99230800-99250400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr10:99231600-99242000	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:99232200-99241400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr10:99232200-99243600	Strong transcription	Liver	Liver
43	chr10:99232200-99244200	Strong transcription	Primary B cells from cord blood	blood
44	chr10:99232400-99241200	Strong transcription	Ovary	ovary
45	chr10:99232400-99242200	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr10:99232400-99242400	Strong transcription	Rectal Smooth Muscle	rectum
47	chr10:99232600-99241400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr10:99232600-99244000	Strong transcription	Fetal Brain Female	brain
49	chr10:99233200-99241200	Strong transcription	Fetal Kidney	kidney
50	chr10:99233400-99241800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood

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