Variant report

Variant	rs11189283
Chromosome Location	chr10:99334414-99334415
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99204433..99207263-chr10:99333172..99335779,3	MCF-7	breast:
2	chr10:99255590..99258774-chr10:99331777..99334688,4	MCF-7	breast:
3	chr10:99275538..99279686-chr10:99333593..99336127,3	MCF-7	breast:
4	chr10:99329733..99337149-chr10:99338392..99346753,19	MCF-7	breast:
5	chr10:99256533..99260506-chr10:99329939..99335950,10	MCF-7	breast:
6	chr10:99333671..99336639-chr10:99408320..99410860,2	MCF-7	breast:
7	chr10:99328694..99331523-chr10:99333360..99336351,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165886	Chromatin interaction
ENSG00000155229	Chromatin interaction
ENSG00000241935	Chromatin interaction
ENSG00000171307	Chromatin interaction
ENSG00000171311	Chromatin interaction
ENSG00000249967	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11189230	1.00[CEU][hapmap]
rs11189236	1.00[CEU][hapmap]
rs11189254	1.00[CEU][hapmap]
rs12240481	1.00[JPT][hapmap]
rs12357653	1.00[CEU][hapmap]
rs3381	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99321200-99334600	Weak transcription	HepG2	liver
2	chr10:99325600-99334600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:99327000-99334600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr10:99327200-99334600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:99329600-99334600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:99329800-99336000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr10:99330000-99335400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:99330800-99334600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:99330800-99335000	Weak transcription	Ovary	ovary
10	chr10:99330800-99335400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
11	chr10:99330800-99336200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:99330800-99336200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:99330800-99336200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr10:99331000-99337200	Enhancers	Fetal Heart	heart
15	chr10:99331400-99336000	Enhancers	Fetal Muscle Leg	muscle
16	chr10:99331400-99336200	Enhancers	Hela-S3	cervix
17	chr10:99331800-99334800	Enhancers	Stomach Smooth Muscle	stomach
18	chr10:99332000-99335400	Enhancers	HMEC	breast
19	chr10:99332000-99335600	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr10:99332000-99335800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr10:99332200-99334600	Weak transcription	Fetal Intestine Large	intestine
22	chr10:99332200-99335000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:99332200-99336200	Enhancers	NHEK	skin
24	chr10:99332400-99335000	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr10:99332600-99334800	Weak transcription	Fetal Intestine Small	intestine
26	chr10:99332600-99334800	Weak transcription	Right Atrium	heart
27	chr10:99332600-99335200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:99332600-99335600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:99332600-99338200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:99332800-99334600	Weak transcription	Adipose Nuclei	Adipose
31	chr10:99332800-99334600	Weak transcription	Brain Anterior Caudate	brain
32	chr10:99332800-99334600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr10:99332800-99336200	Enhancers	HSMM	muscle
34	chr10:99333000-99334600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:99333000-99334600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:99333000-99336000	Enhancers	Fetal Muscle Trunk	muscle
37	chr10:99333200-99335600	Enhancers	HSMMtube	muscle
38	chr10:99333400-99336200	Enhancers	Placenta	Placenta
39	chr10:99333600-99335400	Enhancers	HUVEC	blood vessel
40	chr10:99333800-99335200	Enhancers	Muscle Satellite Cultured Cells	--
41	chr10:99333800-99335200	Enhancers	Osteobl	bone
42	chr10:99333800-99335400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr10:99333800-99336200	Enhancers	Psoas Muscle	Psoas
44	chr10:99334000-99334600	Enhancers	Lung	lung
45	chr10:99334000-99335400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr10:99334000-99336200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:99334200-99334800	Enhancers	H1 Cell Line	embryonic stem cell
48	chr10:99334200-99334800	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr10:99334200-99335000	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr10:99334200-99335000	Enhancers	HUES6 Cell Line	embryonic stem cell

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