Variant report

Variant	rs11189242
Chromosome Location	chr10:99261769-99261770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99256673..99259455-chr10:99260989..99264039,3	K562	blood:
2	chr10:99261479..99263816-chr10:99267425..99269402,2	K562	blood:
3	chr10:99255192..99260643-chr10:99260836..99267100,8	K562	blood:
4	chr10:99260929..99263151-chr10:99296889..99298735,2	MCF-7	breast:
5	chr10:99260312..99262162-chr10:99268018..99269969,2	MCF-7	breast:
6	chr10:99254835..99256478-chr10:99258857..99262357,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155229	Chromatin interaction
ENSG00000165886	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11189230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11189236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189254	0.87[EUR][1000 genomes]
rs12356581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12357653	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12360068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99260200-99262000	Weak transcription	Right Atrium	heart
2	chr10:99260200-99262000	Enhancers	HepG2	liver
3	chr10:99260200-99262800	Weak transcription	Lung	lung
4	chr10:99260200-99263200	Weak transcription	Aorta	Aorta
5	chr10:99260200-99276800	Weak transcription	Pancreas	Pancrea
6	chr10:99260400-99262000	Weak transcription	HSMMtube	muscle
7	chr10:99260400-99262800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:99260400-99263000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:99260400-99264800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr10:99260400-99269400	Weak transcription	Ovary	ovary
11	chr10:99260400-99271400	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:99260400-99272000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:99260600-99263000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:99260600-99263000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:99260600-99263200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:99260600-99263400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:99260600-99264600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:99260600-99267600	Weak transcription	Brain Anterior Caudate	brain
19	chr10:99260600-99267800	Weak transcription	Osteobl	bone
20	chr10:99260600-99268000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:99260600-99268000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:99260600-99268000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:99260600-99268200	Weak transcription	NH-A	brain
24	chr10:99260600-99270800	Weak transcription	Brain Angular Gyrus	brain
25	chr10:99260600-99271200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr10:99260800-99263000	Weak transcription	Brain Hippocampus Middle	brain
27	chr10:99260800-99263000	Weak transcription	Left Ventricle	heart
28	chr10:99260800-99263200	Weak transcription	Right Ventricle	heart
29	chr10:99260800-99267600	Weak transcription	Brain Substantia Nigra	brain
30	chr10:99260800-99267800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:99260800-99267800	Weak transcription	HMEC	breast
32	chr10:99260800-99268000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:99260800-99268000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:99260800-99268000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:99260800-99270400	Weak transcription	Adipose Nuclei	Adipose
36	chr10:99260800-99276800	Weak transcription	HSMM	muscle
37	chr10:99261000-99262000	Weak transcription	Psoas Muscle	Psoas
38	chr10:99261000-99263200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr10:99261000-99263800	Weak transcription	Spleen	Spleen
40	chr10:99261000-99266600	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr10:99261000-99267800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:99261000-99267800	Weak transcription	NHLF	lung
43	chr10:99261000-99270800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr10:99261200-99262400	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr10:99261400-99262600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:99261400-99263200	Weak transcription	Fetal Muscle Trunk	muscle
47	chr10:99261600-99262400	Enhancers	Fetal Intestine Small	intestine
48	chr10:99261600-99262600	Enhancers	Fetal Lung	lung
49	chr10:99261600-99263000	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr10:99261600-99264800	Weak transcription	Monocytes-CD14+_RO01746	blood

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