Variant report

Variant	rs17107905
Chromosome Location	chr10:99272244-99272245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99256475..99261666-chr10:99270366..99276913,12	MCF-7	breast:
2	chr10:99271315..99274212-chr10:99282293..99285243,2	K562	blood:

Variant related genes	Relation type
ENSG00000155229	Chromatin interaction
ENSG00000165886	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11189254	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12245837	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12259524	0.85[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12263319	0.84[ASN][1000 genomes]
rs12263477	0.80[ASN][1000 genomes]
rs17108072	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17108087	0.84[ASN][1000 genomes]
rs17108114	1.00[JPT][hapmap]
rs17112803	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17112837	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1889545	0.82[JPT][hapmap]
rs2153545	0.84[ASN][1000 genomes]
rs2275588	0.82[JPT][hapmap]
rs29001266	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3814552	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4418736	0.91[CHD][hapmap];0.82[JPT][hapmap]
rs4919098	0.91[CHD][hapmap];0.82[JPT][hapmap]
rs4919110	1.00[JPT][hapmap]
rs59951048	0.84[ASN][1000 genomes]
rs6584129	0.82[ASW][hapmap];1.00[MEX][hapmap]
rs7077096	0.84[ASN][1000 genomes]
rs7089713	1.00[CHB][hapmap];0.92[CHD][hapmap]
rs7897321	0.82[YRI][hapmap]
rs7912825	0.82[JPT][hapmap]
rs7920245	1.00[MEX][hapmap]
rs7922873	0.84[ASN][1000 genomes]
rs928604	0.91[CHD][hapmap];0.82[JPT][hapmap]
rs946984	1.00[CHB][hapmap]
rs946987	1.00[CHB][hapmap];0.92[CHD][hapmap]
rs964733	0.91[CHD][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99260200-99276800	Weak transcription	Pancreas	Pancrea
2	chr10:99260800-99276800	Weak transcription	HSMM	muscle
3	chr10:99263600-99277800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:99263800-99277200	Weak transcription	HSMMtube	muscle
5	chr10:99263800-99277600	Weak transcription	Aorta	Aorta
6	chr10:99266200-99277600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr10:99266600-99277400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:99268000-99274400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:99268200-99272400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:99268400-99278200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:99268600-99272800	Weak transcription	NHEK	skin
12	chr10:99268600-99275000	Weak transcription	Fetal Kidney	kidney
13	chr10:99268600-99275200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:99268600-99275400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:99268600-99276600	Weak transcription	HMEC	breast
16	chr10:99268600-99277600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr10:99268600-99277600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:99268600-99277800	Weak transcription	NHLF	lung
19	chr10:99268800-99272400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:99268800-99274200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:99268800-99274600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr10:99268800-99274800	Weak transcription	Brain Hippocampus Middle	brain
23	chr10:99268800-99276600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:99268800-99276600	Weak transcription	HUVEC	blood vessel
25	chr10:99268800-99277000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:99268800-99277400	Weak transcription	NH-A	brain
27	chr10:99268800-99277800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr10:99269000-99272800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr10:99269000-99274600	Weak transcription	Brain Substantia Nigra	brain
30	chr10:99269000-99277000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr10:99269000-99277600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr10:99269200-99274200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:99269400-99276600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:99270400-99273000	Enhancers	Adipose Nuclei	Adipose
35	chr10:99270600-99274000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:99270800-99272400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:99270800-99272600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:99270800-99286200	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr10:99271200-99272600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:99271200-99273200	Enhancers	Left Ventricle	heart
41	chr10:99271200-99273600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr10:99271200-99279200	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr10:99271400-99277400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr10:99271600-99272400	Enhancers	Lung	lung
45	chr10:99271600-99272400	Enhancers	HepG2	liver
46	chr10:99271600-99272600	Enhancers	Fetal Stomach	stomach
47	chr10:99271600-99272800	Enhancers	Right Ventricle	heart
48	chr10:99271600-99273000	Enhancers	Brain Cingulate Gyrus	brain
49	chr10:99271600-99273200	Enhancers	K562	blood
50	chr10:99271600-99273400	Enhancers	Fetal Muscle Leg	muscle

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