Variant report

Variant	rs4919110
Chromosome Location	chr10:99306735-99306736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99255761..99258218-chr10:99306296..99308744,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10748703	1.00[CEU][hapmap]
rs10882958	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11189254	1.00[JPT][hapmap]
rs12245837	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12259524	0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12263319	0.90[ASN][1000 genomes]
rs12263477	0.86[ASN][1000 genomes]
rs17107905	1.00[JPT][hapmap]
rs17108072	0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17108087	0.90[ASN][1000 genomes]
rs17108114	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17112803	1.00[JPT][hapmap]
rs1889545	0.82[JPT][hapmap]
rs2153545	0.90[ASN][1000 genomes]
rs2153546	1.00[CEU][hapmap]
rs2185512	1.00[CEU][hapmap]
rs2275588	1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs2861969	1.00[CEU][hapmap]
rs35311829	0.95[ASN][1000 genomes]
rs3814552	1.00[JPT][hapmap]
rs4244322	1.00[CEU][hapmap]
rs4244323	0.84[ASN][1000 genomes]
rs4418736	0.82[JPT][hapmap]
rs4917775	1.00[CEU][hapmap]
rs4919098	0.82[JPT][hapmap]
rs4919112	1.00[CEU][hapmap]
rs58336429	0.84[ASN][1000 genomes]
rs59951048	0.90[ASN][1000 genomes]
rs60730732	0.84[ASN][1000 genomes]
rs7077096	0.90[ASN][1000 genomes]
rs7077652	1.00[CEU][hapmap]
rs7097951	1.00[CEU][hapmap]
rs7912825	1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs7919450	1.00[CEU][hapmap]
rs7922873	0.90[ASN][1000 genomes]
rs928604	0.82[JPT][hapmap]
rs964733	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99300600-99309200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr10:99302200-99308600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:99302600-99308800	Weak transcription	Fetal Thymus	thymus
4	chr10:99303000-99327600	Weak transcription	Aorta	Aorta
5	chr10:99303200-99308400	Weak transcription	HepG2	liver
6	chr10:99303200-99308800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:99303200-99309000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:99303200-99327600	Weak transcription	Pancreas	Pancrea
9	chr10:99303400-99306800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:99303400-99307800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:99303400-99308000	Enhancers	HUVEC	blood vessel
12	chr10:99303400-99308800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:99303400-99309600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:99303600-99306800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:99303600-99306800	Weak transcription	Left Ventricle	heart
16	chr10:99303600-99308800	Weak transcription	Placenta	Placenta
17	chr10:99303600-99308800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:99303600-99309000	Weak transcription	Fetal Heart	heart
19	chr10:99303600-99309400	Weak transcription	Fetal Lung	lung
20	chr10:99303800-99306800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:99303800-99306800	Weak transcription	Right Ventricle	heart
22	chr10:99303800-99307600	Weak transcription	Osteobl	bone
23	chr10:99303800-99307800	Weak transcription	Brain Angular Gyrus	brain
24	chr10:99303800-99308600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:99303800-99308600	Weak transcription	Brain Anterior Caudate	brain
26	chr10:99303800-99308800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:99303800-99309000	Weak transcription	A549	lung
28	chr10:99303800-99309400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:99303800-99309400	Weak transcription	Colon Smooth Muscle	Colon
30	chr10:99303800-99327800	Weak transcription	Ovary	ovary
31	chr10:99304000-99308600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:99304000-99308600	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr10:99304200-99306800	Weak transcription	Right Atrium	heart
34	chr10:99304200-99307000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr10:99304200-99307000	Weak transcription	NHLF	lung
36	chr10:99304200-99307600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr10:99304200-99307600	Weak transcription	HMEC	breast
38	chr10:99304200-99308000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:99304200-99309200	Weak transcription	NHDF-Ad	bronchial
40	chr10:99304200-99313400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr10:99304400-99306800	Weak transcription	NH-A	brain
42	chr10:99304400-99307000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr10:99304400-99307600	Weak transcription	NHEK	skin
44	chr10:99304400-99308600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:99304400-99308800	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr10:99304800-99307000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr10:99305400-99307200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr10:99305600-99306800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:99305600-99309800	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr10:99305800-99307000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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