Variant report

Variant	rs7919450
Chromosome Location	chr10:99329435-99329436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99328694..99331523-chr10:99333360..99336351,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10748702	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10748703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748704	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748705	1.00[EUR][1000 genomes]
rs10786357	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882960	0.90[AFR][1000 genomes]
rs1417409	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2153546	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2185512	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2861969	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4244322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4917775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4919110	1.00[CEU][hapmap]
rs4919111	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4919112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4919114	0.83[ASN][1000 genomes]
rs55831446	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57607476	1.00[ASN][1000 genomes]
rs6584135	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6584136	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7077652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081548	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7097951	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs73332755	1.00[ASN][1000 genomes]
rs74155506	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99313800-99329800	Weak transcription	Gastric	stomach
2	chr10:99313800-99330600	Weak transcription	Brain Angular Gyrus	brain
3	chr10:99321000-99330600	Weak transcription	A549	lung
4	chr10:99321200-99334600	Weak transcription	HepG2	liver
5	chr10:99322000-99333000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:99325200-99329800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:99325400-99332200	Weak transcription	HUVEC	blood vessel
8	chr10:99325600-99334600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:99326000-99329800	Weak transcription	Esophagus	oesophagus
10	chr10:99326000-99332200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:99326000-99334200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:99326200-99330600	Weak transcription	Fetal Lung	lung
13	chr10:99326400-99334200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:99326600-99330600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:99326800-99330000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:99327000-99334600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:99327200-99332200	Weak transcription	Right Atrium	heart
18	chr10:99327200-99334600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:99327400-99330800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:99327600-99330000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:99327600-99330400	Strong transcription	Brain Anterior Caudate	brain
22	chr10:99327600-99330600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr10:99327600-99330600	Strong transcription	Left Ventricle	heart
24	chr10:99327600-99330800	Strong transcription	NHLF	lung
25	chr10:99327600-99331000	Strong transcription	Pancreas	Pancrea
26	chr10:99327600-99331200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr10:99327600-99331400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:99327600-99331400	Strong transcription	Stomach Smooth Muscle	stomach
29	chr10:99327600-99331600	Strong transcription	Lung	lung
30	chr10:99327600-99332200	Strong transcription	Spleen	Spleen
31	chr10:99327600-99332400	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr10:99327800-99329600	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr10:99327800-99330600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:99327800-99330600	Strong transcription	Brain Inferior Temporal Lobe	brain
35	chr10:99327800-99330600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr10:99327800-99330800	Strong transcription	Ovary	ovary
37	chr10:99327800-99331200	Strong transcription	Adipose Nuclei	Adipose
38	chr10:99327800-99331400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:99327800-99331400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:99327800-99331400	Strong transcription	Right Ventricle	heart
41	chr10:99327800-99331600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:99327800-99331600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:99327800-99331800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:99327800-99331800	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr10:99327800-99331800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr10:99327800-99331800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr10:99327800-99332000	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr10:99327800-99332000	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr10:99327800-99334400	Weak transcription	Colon Smooth Muscle	Colon
50	chr10:99328000-99330800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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