Variant report

Variant	rs10882960
Chromosome Location	chr10:99305613-99305614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99303622..99306407-chr10:99309864..99312001,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10748702	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10748703	0.83[AFR][1000 genomes]
rs10748704	0.83[AFR][1000 genomes]
rs1111831	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1417409	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2185512	1.00[ASN][1000 genomes]
rs2861969	1.00[ASN][1000 genomes]
rs4917775	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4919111	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4919112	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6584135	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6584136	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7077652	0.80[AFR][1000 genomes]
rs7081548	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7097951	1.00[ASN][1000 genomes]
rs7919450	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	esv992861	chr10:99298852-99305974	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv3425006	chr10:99305372-99305717	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99300600-99306600	Weak transcription	Fetal Kidney	kidney
2	chr10:99300600-99309200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:99302200-99308600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:99302600-99308800	Weak transcription	Fetal Thymus	thymus
5	chr10:99303000-99327600	Weak transcription	Aorta	Aorta
6	chr10:99303200-99308400	Weak transcription	HepG2	liver
7	chr10:99303200-99308800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:99303200-99309000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr10:99303200-99327600	Weak transcription	Pancreas	Pancrea
10	chr10:99303400-99306800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:99303400-99307800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:99303400-99308000	Enhancers	HUVEC	blood vessel
13	chr10:99303400-99308800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:99303400-99309600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:99303600-99305800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:99303600-99306400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:99303600-99306800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:99303600-99306800	Weak transcription	Left Ventricle	heart
19	chr10:99303600-99308800	Weak transcription	Placenta	Placenta
20	chr10:99303600-99308800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:99303600-99309000	Weak transcription	Fetal Heart	heart
22	chr10:99303600-99309400	Weak transcription	Fetal Lung	lung
23	chr10:99303800-99305800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr10:99303800-99306200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:99303800-99306200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr10:99303800-99306200	Weak transcription	HSMMtube	muscle
27	chr10:99303800-99306400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:99303800-99306400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr10:99303800-99306400	Weak transcription	Adipose Nuclei	Adipose
30	chr10:99303800-99306400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:99303800-99306400	Weak transcription	Spleen	Spleen
32	chr10:99303800-99306600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:99303800-99306600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:99303800-99306800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:99303800-99306800	Weak transcription	Right Ventricle	heart
36	chr10:99303800-99307600	Weak transcription	Osteobl	bone
37	chr10:99303800-99307800	Weak transcription	Brain Angular Gyrus	brain
38	chr10:99303800-99308600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr10:99303800-99308600	Weak transcription	Brain Anterior Caudate	brain
40	chr10:99303800-99308800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:99303800-99309000	Weak transcription	A549	lung
42	chr10:99303800-99309400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:99303800-99309400	Weak transcription	Colon Smooth Muscle	Colon
44	chr10:99303800-99327800	Weak transcription	Ovary	ovary
45	chr10:99304000-99306000	Weak transcription	Fetal Muscle Leg	muscle
46	chr10:99304000-99306000	Weak transcription	HSMM	muscle
47	chr10:99304000-99306200	Weak transcription	Brain Cingulate Gyrus	brain
48	chr10:99304000-99306400	Weak transcription	Brain Substantia Nigra	brain
49	chr10:99304000-99306400	Weak transcription	Psoas Muscle	Psoas
50	chr10:99304000-99308600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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