Variant report

Variant	rs1111831
Chromosome Location	chr10:99299330-99299331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99297536..99299525-chr10:99302249..99303762,2	MCF-7	breast:
2	chr10:99293705..99296189-chr10:99297526..99301633,5	MCF-7	breast:
3	chr10:99204676..99206616-chr10:99299174..99301378,2	MCF-7	breast:
4	chr10:99298484..99301202-chr10:99302783..99304402,2	MCF-7	breast:
5	chr10:99258307..99260062-chr10:99297196..99299410,2	MCF-7	breast:
6	chr10:99298137..99300363-chr10:99331501..99333055,2	MCF-7	breast:
7	chr10:99296911..99299412-chr10:99301338..99303433,2	K562	blood:

Variant related genes	Relation type
ENSG00000165887	Chromatin interaction
ENSG00000165886	Chromatin interaction
ENSG00000155229	Chromatin interaction
ENSG00000171307	Chromatin interaction
ENSG00000171311	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10748702	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10748703	0.83[AFR][1000 genomes]
rs10748704	0.83[AFR][1000 genomes]
rs10882960	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1417409	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2185512	1.00[ASN][1000 genomes]
rs2861969	1.00[ASN][1000 genomes]
rs4917775	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4919111	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4919112	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4919114	0.85[AMR][1000 genomes]
rs6584135	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6584136	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7081548	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7097951	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	esv992861	chr10:99298852-99305974	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99277800-99301800	Weak transcription	Gastric	stomach
2	chr10:99278000-99302600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr10:99278400-99301800	Weak transcription	Spleen	Spleen
4	chr10:99278600-99300200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:99281400-99302200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:99282200-99301800	Weak transcription	Pancreas	Pancrea
7	chr10:99282800-99299400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:99290000-99299400	Weak transcription	Right Ventricle	heart
9	chr10:99293200-99301800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:99293400-99299400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:99293400-99299600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:99293400-99300400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:99294400-99301800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:99294800-99299400	Weak transcription	Esophagus	oesophagus
15	chr10:99295000-99299400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:99295200-99299600	Weak transcription	K562	blood
17	chr10:99295400-99302400	Weak transcription	Fetal Intestine Small	intestine
18	chr10:99296400-99299600	Weak transcription	Fetal Stomach	stomach
19	chr10:99297000-99300400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:99297200-99300000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:99297200-99303600	Enhancers	Placenta	Placenta
22	chr10:99297400-99299400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:99297400-99300800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr10:99297400-99302200	Enhancers	HSMMtube	muscle
25	chr10:99297800-99300000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:99297800-99300800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:99297800-99301600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:99297800-99301800	Enhancers	Muscle Satellite Cultured Cells	--
29	chr10:99297800-99301800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:99297800-99301800	Enhancers	Osteobl	bone
31	chr10:99297800-99302800	Enhancers	NH-A	brain
32	chr10:99298200-99299400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:99298200-99300000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:99298200-99300400	Enhancers	NHEK	skin
35	chr10:99298200-99301200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:99298200-99301800	Enhancers	A549	lung
37	chr10:99298200-99301800	Enhancers	HSMM	muscle
38	chr10:99298200-99301800	Enhancers	NHDF-Ad	bronchial
39	chr10:99298200-99301800	Enhancers	NHLF	lung
40	chr10:99298200-99302400	Enhancers	HMEC	breast
41	chr10:99298200-99302600	Enhancers	Adipose Nuclei	Adipose
42	chr10:99298200-99302800	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr10:99298200-99302800	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr10:99298200-99302800	Enhancers	HUVEC	blood vessel
45	chr10:99298200-99304200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:99298200-99304200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:99298200-99304200	Enhancers	Brain Hippocampus Middle	brain
48	chr10:99298400-99300800	Enhancers	Brain Cingulate Gyrus	brain
49	chr10:99298400-99302800	Enhancers	Brain Angular Gyrus	brain
50	chr10:99298400-99303600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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