Variant report

Variant	rs4919112
Chromosome Location	chr10:99319277-99319278
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10748702	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10748704	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10748705	1.00[EUR][1000 genomes]
rs10786357	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10882960	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1111831	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1417409	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153546	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2185512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2861969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4244322	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4917775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919110	1.00[CEU][hapmap]
rs4919111	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55831446	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6584135	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6584136	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077652	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7081548	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7919450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99303000-99327600	Weak transcription	Aorta	Aorta
2	chr10:99303200-99327600	Weak transcription	Pancreas	Pancrea
3	chr10:99303800-99327800	Weak transcription	Ovary	ovary
4	chr10:99310400-99327600	Weak transcription	Lung	lung
5	chr10:99310400-99327800	Weak transcription	Right Ventricle	heart
6	chr10:99310800-99320600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:99310800-99326400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:99310800-99327600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:99310800-99327600	Weak transcription	Spleen	Spleen
10	chr10:99311400-99327600	Weak transcription	Left Ventricle	heart
11	chr10:99311400-99328800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:99313800-99319400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:99313800-99320000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:99313800-99320200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:99313800-99320200	Weak transcription	Adipose Nuclei	Adipose
16	chr10:99313800-99320200	Weak transcription	Osteobl	bone
17	chr10:99313800-99321800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:99313800-99327400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:99313800-99327600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:99313800-99327600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:99313800-99327600	Weak transcription	NHLF	lung
22	chr10:99313800-99329800	Weak transcription	Gastric	stomach
23	chr10:99313800-99330600	Weak transcription	Brain Angular Gyrus	brain
24	chr10:99314000-99321600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr10:99314000-99326200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:99314800-99320800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr10:99315000-99320200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:99315000-99321600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:99315000-99329000	Weak transcription	HSMMtube	muscle
30	chr10:99316400-99325800	Weak transcription	NHEK	skin
31	chr10:99317200-99320800	Weak transcription	Liver	Liver
32	chr10:99318000-99320200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:99319200-99321600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:99319200-99321600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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