Variant report

Variant	rs7097951
Chromosome Location	chr10:99313476-99313477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99312057..99313792-chr10:99332151..99333751,2	MCF-7	breast:
2	chr10:99223105..99224199-chr10:99313315..99313877,3	K562	blood:
3	chr10:99301268..99303688-chr10:99312791..99314821,3	MCF-7	breast:
4	chr10:99313367..99313870-chr10:99331720..99332464,2	MCF-7	breast:
5	chr10:99223115..99224039-chr10:99312943..99313970,3	MCF-7	breast:
6	chr10:99293924..99295180-chr10:99312973..99313927,7	MCF-7	breast:
7	chr10:99294357..99295108-chr10:99313347..99313880,2	K562	blood:
8	chr10:99312973..99313822-chr10:99372040..99372690,2	MCF-7	breast:
9	chr10:99311940..99314624-chr10:99329998..99332096,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000155229	Chromatin interaction
ENSG00000165887	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10748702	1.00[ASN][1000 genomes]
rs10748703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10882960	1.00[ASN][1000 genomes]
rs1111831	1.00[ASN][1000 genomes]
rs1417409	1.00[ASN][1000 genomes]
rs2153546	1.00[CEU][hapmap]
rs2185512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2861969	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4244322	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4917775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4919110	1.00[CEU][hapmap]
rs4919111	1.00[ASN][1000 genomes]
rs4919112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6584131	1.00[CHD][hapmap]
rs6584135	1.00[ASN][1000 genomes]
rs6584136	1.00[ASN][1000 genomes]
rs7077652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7081548	1.00[ASN][1000 genomes]
rs7908417	1.00[CHD][hapmap]
rs7919450	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99303000-99327600	Weak transcription	Aorta	Aorta
2	chr10:99303200-99327600	Weak transcription	Pancreas	Pancrea
3	chr10:99303800-99327800	Weak transcription	Ovary	ovary
4	chr10:99307200-99313600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:99309800-99316200	Weak transcription	Liver	Liver
6	chr10:99310400-99327600	Weak transcription	Lung	lung
7	chr10:99310400-99327800	Weak transcription	Right Ventricle	heart
8	chr10:99310800-99313600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:99310800-99313600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:99310800-99320600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:99310800-99326400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:99310800-99327600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:99310800-99327600	Weak transcription	Spleen	Spleen
14	chr10:99311000-99313600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:99311400-99313600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr10:99311400-99313600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:99311400-99313600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:99311400-99327600	Weak transcription	Left Ventricle	heart
19	chr10:99311400-99328800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:99312200-99314000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:99312800-99313800	Enhancers	Brain Hippocampus Middle	brain
22	chr10:99312800-99313800	Enhancers	NHEK	skin
23	chr10:99312800-99314000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:99312800-99314200	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr10:99313000-99313800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:99313000-99313800	Enhancers	Fetal Muscle Trunk	muscle
27	chr10:99313000-99313800	Enhancers	Stomach Smooth Muscle	stomach
28	chr10:99313000-99314000	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr10:99313200-99313600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:99313200-99313600	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr10:99313200-99313600	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr10:99313200-99313600	Enhancers	Esophagus	oesophagus
33	chr10:99313200-99313600	Enhancers	Placenta Amnion	Placenta Amnion
34	chr10:99313200-99313800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:99313200-99313800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:99313200-99313800	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr10:99313200-99313800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:99313200-99313800	Enhancers	Muscle Satellite Cultured Cells	--
39	chr10:99313200-99313800	Enhancers	Adipose Nuclei	Adipose
40	chr10:99313200-99313800	Enhancers	Brain Angular Gyrus	brain
41	chr10:99313200-99313800	Enhancers	Brain Anterior Caudate	brain
42	chr10:99313200-99313800	Enhancers	Brain Cingulate Gyrus	brain
43	chr10:99313200-99313800	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr10:99313200-99313800	Enhancers	Brain Substantia Nigra	brain
45	chr10:99313200-99313800	Enhancers	Colon Smooth Muscle	Colon
46	chr10:99313200-99313800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr10:99313200-99313800	Enhancers	Fetal Muscle Leg	muscle
48	chr10:99313200-99313800	Enhancers	Fetal Stomach	stomach
49	chr10:99313200-99313800	Enhancers	HMEC	breast
50	chr10:99313200-99313800	Enhancers	HUVEC	blood vessel

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