Variant report

Variant	rs55831446
Chromosome Location	chr10:99327068-99327069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99326572..99328961-chr10:99329833..99332100,2	K562	blood:
2	chr10:99257342..99258988-chr10:99326184..99329415,3	MCF-7	breast:
3	chr10:99326165..99327172-chr10:99339740..99340648,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155229	Chromatin interaction
ENSG00000165886	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10748702	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10748703	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748704	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748705	1.00[EUR][1000 genomes]
rs10786357	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1417409	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2153546	0.85[EUR][1000 genomes]
rs4244322	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4244324	0.83[AFR][1000 genomes]
rs4917775	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4919111	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4919112	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4919114	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs57607476	1.00[ASN][1000 genomes]
rs6584135	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6584136	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7077652	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081548	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73332755	1.00[ASN][1000 genomes]
rs74155506	1.00[ASN][1000 genomes]
rs7919450	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99303000-99327600	Weak transcription	Aorta	Aorta
2	chr10:99303200-99327600	Weak transcription	Pancreas	Pancrea
3	chr10:99303800-99327800	Weak transcription	Ovary	ovary
4	chr10:99310400-99327600	Weak transcription	Lung	lung
5	chr10:99310400-99327800	Weak transcription	Right Ventricle	heart
6	chr10:99310800-99327600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr10:99310800-99327600	Weak transcription	Spleen	Spleen
8	chr10:99311400-99327600	Weak transcription	Left Ventricle	heart
9	chr10:99311400-99328800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:99313800-99327400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:99313800-99327600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:99313800-99327600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:99313800-99327600	Weak transcription	NHLF	lung
14	chr10:99313800-99329800	Weak transcription	Gastric	stomach
15	chr10:99313800-99330600	Weak transcription	Brain Angular Gyrus	brain
16	chr10:99315000-99329000	Weak transcription	HSMMtube	muscle
17	chr10:99321000-99327600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:99321000-99327800	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:99321000-99329000	Weak transcription	NHDF-Ad	bronchial
20	chr10:99321000-99330600	Weak transcription	A549	lung
21	chr10:99321200-99327600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:99321200-99327800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:99321200-99327800	Weak transcription	Adipose Nuclei	Adipose
24	chr10:99321200-99327800	Weak transcription	HSMM	muscle
25	chr10:99321200-99328000	Weak transcription	Liver	Liver
26	chr10:99321200-99329000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr10:99321200-99329000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:99321200-99329000	Weak transcription	Osteobl	bone
29	chr10:99321200-99334600	Weak transcription	HepG2	liver
30	chr10:99321600-99327800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:99321800-99327800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr10:99322000-99333000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr10:99322200-99327600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:99322200-99328400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr10:99322600-99327600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:99324400-99327600	Weak transcription	Brain Anterior Caudate	brain
37	chr10:99324400-99327800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:99324800-99327800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr10:99324800-99327800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr10:99324800-99328000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr10:99325000-99327800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr10:99325000-99329000	Weak transcription	NH-A	brain
43	chr10:99325200-99329800	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr10:99325400-99328200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr10:99325400-99332200	Weak transcription	HUVEC	blood vessel
46	chr10:99325600-99327800	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr10:99325600-99327800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr10:99325600-99334600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr10:99325800-99327600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr10:99325800-99328400	Weak transcription	Brain Cingulate Gyrus	brain

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