Variant report

Variant	rs57607476
Chromosome Location	chr10:99337802-99337803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10748703	1.00[ASN][1000 genomes]
rs10748704	1.00[ASN][1000 genomes]
rs10786357	1.00[ASN][1000 genomes]
rs4244322	1.00[ASN][1000 genomes]
rs4919114	0.83[ASN][1000 genomes]
rs55831446	1.00[ASN][1000 genomes]
rs57069102	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7077652	1.00[ASN][1000 genomes]
rs73332755	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74155506	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7919450	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
4	nsv818782	chr10:99337572-99350128	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99332600-99338200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:99334600-99338200	Weak transcription	Lung	lung
3	chr10:99334800-99343400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:99335000-99338000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:99335000-99338000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:99335000-99343400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:99335200-99343400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:99335400-99340200	Weak transcription	Pancreas	Pancrea
9	chr10:99336000-99338200	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:99336000-99342000	Weak transcription	Right Ventricle	heart
11	chr10:99336000-99348800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:99336200-99338000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:99336200-99339800	Weak transcription	Hela-S3	cervix
14	chr10:99336200-99340200	Weak transcription	Placenta	Placenta
15	chr10:99336200-99340800	Weak transcription	Right Atrium	heart
16	chr10:99336200-99342000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:99336200-99343400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:99336200-99343400	Weak transcription	Psoas Muscle	Psoas
19	chr10:99337200-99338600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
20	chr10:99337400-99338800	Strong transcription	Left Ventricle	heart
21	chr10:99337800-99338000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:99337800-99338000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:99337800-99338000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr10:99337800-99338200	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
25	chr10:99337800-99340000	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr10:99337800-99343000	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links