Variant report

Variant	rs4919098
Chromosome Location	chr10:99205731-99205732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:99205680-99205830	HUVEC	blood vessel:	n/a	n/a
2	YY1	chr10:99205256-99206268	A549	lung:	n/a	n/a
3	POLR2A	chr10:99205384-99206339	GM12878	blood:	n/a	n/a
4	CTCF	chr10:99205720-99205870	GM12872	blood:	n/a	n/a
5	REST	chr10:99205582-99206149	PFSK-1	brain:	n/a	n/a
6	YY1	chr10:99205350-99206351	H1-hESC	embryonic stem cell:	n/a	n/a
7	MYC	chr10:99205629-99206044	MCF10A-Er-Src	breast:	n/a	chr10:99205816-99205835 chr10:99205819-99205832
8	YY1	chr10:99205252-99206162	SK-N-SH	brain:	n/a	n/a
9	MXI1	chr10:99204839-99206785	SK-N-SH	brain:	n/a	n/a
10	POLR2A	chr10:99205573-99205810	A549	lung:	n/a	n/a
11	SP1	chr10:99205376-99206307	A549	lung:	n/a	chr10:99206213-99206225 chr10:99206214-99206223 chr10:99205776-99205797 chr10:99206213-99206225
12	CTCF	chr10:99205720-99205870	GM12864	blood:	n/a	n/a
13	POLR2A	chr10:99205481-99206384	Hela-S3	cervix:	n/a	n/a
14	MAX	chr10:99205397-99206481	MCF-7	breast:	n/a	chr10:99205816-99205835 chr10:99205819-99205832
15	MAZ	chr10:99205588-99206397	GM12878	blood:	n/a	chr10:99205816-99205835 chr10:99205819-99205832
16	CTCF	chr10:99205620-99205770	GM12864	blood:	n/a	n/a
17	SMC3	chr10:99205488-99205782	GM12878	blood:	n/a	n/a
18	CTCF	chr10:99205677-99205784	HepG2	liver:	n/a	n/a
19	YY1	chr10:99205429-99206176	SK-N-SH_RA	brain:	n/a	n/a
20	NFYA	chr10:99205553-99205925	GM12878	blood:	n/a	chr10:99205783-99205798 chr10:99205783-99205798 chr10:99205784-99205798 chr10:99205786-99205796 chr10:99205787-99205799 chr10:99205779-99205797
21	CTCF	chr10:99205660-99205810	AG09319	gingival:	n/a	n/a
22	CTCF	chr10:99205660-99205810	HCPEpiC	choroid plexus:	n/a	n/a
23	CTCF	chr10:99205620-99205770	HRPEpiC	eye:	n/a	n/a
24	STAT5A	chr10:99205406-99206017	GM12878	blood:	n/a	n/a
25	USF1	chr10:99205652-99206103	SK-N-SH	brain:	n/a	n/a
26	YY1	chr10:99205574-99206008	HCT-116	colon:	n/a	n/a
27	YY1	chr10:99205459-99206037	HepG2	liver:	n/a	n/a
28	USF1	chr10:99205522-99206289	A549	lung:	n/a	n/a
29	FOS	chr10:99205637-99206009	K562	blood:	n/a	chr10:99205785-99205794
30	RFX5	chr10:99205176-99206287	Hela-S3	cervix:	n/a	chr10:99205786-99205795
31	CTCF	chr10:99205660-99205819	GM10248	blood:	n/a	n/a
32	TBL1XR1	chr10:99205517-99205816	K562	blood:	n/a	n/a
33	SP1	chr10:99205416-99206326	A549	lung:	n/a	chr10:99206213-99206225 chr10:99206214-99206223 chr10:99205776-99205797 chr10:99206213-99206225
34	NFYB	chr10:99205607-99205995	Hela-S3	cervix:	n/a	chr10:99205783-99205798 chr10:99205783-99205798 chr10:99205784-99205798 chr10:99205786-99205796 chr10:99205785-99205800 chr10:99205787-99205799
35	SIN3A	chr10:99205031-99206525	H1-hESC	embryonic stem cell:	n/a	n/a
36	CTCF	chr10:99205600-99205750	HRE	kidney:	n/a	n/a
37	CTCF	chr10:99205660-99205810	Hela-S3	cervix:	n/a	n/a
38	PML	chr10:99205532-99206194	MCF-7	breast:	n/a	n/a
39	MYC	chr10:99205636-99206005	HUVEC	blood vessel:	n/a	chr10:99205816-99205835 chr10:99205819-99205832
40	MAZ	chr10:99205699-99206274	HepG2	liver:	n/a	chr10:99205816-99205835 chr10:99205819-99205832
41	TCF7L2	chr10:99205668-99206223	HCT-116	colon:	n/a	n/a
42	POLR2A	chr10:99205522-99206310	MCF10A-Er-Src	breast:	n/a	n/a
43	POU2F2	chr10:99205458-99205948	GM12891	blood:	n/a	n/a
44	IRF3	chr10:99205623-99205975	GM12878	blood:	n/a	chr10:99205891-99205905
45	POLR2A	chr10:99205240-99206402	GM19193	blood:	n/a	n/a
46	CTCF	chr10:99205620-99205770	BJ	skin:	n/a	n/a
47	EGR1	chr10:99205446-99206183	ECC-1	luminal epithelium:	n/a	chr10:99205920-99205929 chr10:99205888-99205902 chr10:99205883-99205905 chr10:99205887-99205900 chr10:99205887-99205900 chr10:99205858-99205882
48	POLR2A	chr10:99205535-99206197	HCT-116	colon:	n/a	n/a
49	CTCF	chr10:99205660-99205810	HEK293	kidney:	n/a	n/a
50	USF1	chr10:99205679-99205975	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:99185396..99188802-chr10:99202940..99206887,5	K562	blood:
2	chr10:99204257..99208828-chr10:99209002..99214217,10	MCF-7	breast:
3	chr10:99185304..99188802-chr10:99201388..99207254,8	K562	blood:
4	chr10:99204868..99207758-chr10:99220730..99223345,2	MCF-7	breast:
5	chr10:99205729..99207747-chr10:99256104..99259230,4	MCF-7	breast:
6	chr10:99204791..99207168-chr10:99222392..99224598,2	MCF-7	breast:
7	chr10:99205614..99206273-chr4:76439380..76440338,2	HCT-116	colon:
8	chr10:99205561..99206266-chr5:43121478..43122158,2	Hela-S3	cervix:
9	chr10:99158767..99161294-chr10:99204142..99206207,3	K562	blood:
10	chr10:99204978..99208381-chr10:99211777..99214461,3	MCF-7	breast:
11	chr10:99205389..99207344-chr10:99208638..99211483,4	MCF-7	breast:
12	chr10:99187101..99190236-chr10:99202891..99208015,7	MCF-7	breast:
13	chr10:99145788..99148369-chr10:99203944..99206284,2	K562	blood:
14	chr10:99204416..99207741-chr10:99255231..99259773,5	K562	blood:
15	chr10:6244775..6245298-chr10:99205705..99206213,2	Hela-S3	cervix:
16	chr10:99204668..99206188-chr17:41464881..41466552,2	MCF-7	breast:
17	chr10:99205621..99207743-chr10:99257584..99260294,2	MCF-7	breast:
18	chr10:99185991..99188987-chr10:99203440..99207245,5	MCF-7	breast:

Variant related genes	Relation type
ZDHHC16	TF binding region
EXOSC1	TF binding region
ENSG00000171307	Chromatin interaction
ENSG00000165886	Chromatin interaction
ENSG00000163743	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000155229	Chromatin interaction
ENSG00000052749	Chromatin interaction
ENSG00000224474	Chromatin interaction
ENSG00000170525	Chromatin interaction
ENSG00000172262	Chromatin interaction
ENSG00000171314	Chromatin interaction
ENSG00000174796	Chromatin interaction
ENSG00000231970	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10882935	0.83[EUR][1000 genomes]
rs11189213	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs11189254	0.82[JPT][hapmap]
rs12245837	0.82[JPT][hapmap]
rs12250338	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12259524	0.82[JPT][hapmap]
rs17107905	0.91[CHD][hapmap];0.82[JPT][hapmap]
rs17108072	0.82[JPT][hapmap]
rs17112803	1.00[CHD][hapmap];0.82[JPT][hapmap]
rs1889545	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2861953	0.97[ASN][1000 genomes]
rs2861954	0.88[EUR][1000 genomes]
rs3763672	0.97[ASN][1000 genomes]
rs3814552	0.91[CHD][hapmap];0.82[JPT][hapmap]
rs3893064	0.97[ASN][1000 genomes]
rs4418736	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4919110	0.82[JPT][hapmap]
rs60890987	0.90[ASN][1000 genomes]
rs6584122	0.89[CEU][hapmap]
rs7089713	0.83[CHD][hapmap]
rs928604	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs946984	0.82[JPT][hapmap]
rs946987	0.83[CHD][hapmap]
rs964733	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99204200-99207000	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr10:99204400-99206400	Active TSS	Stomach Smooth Muscle	stomach
3	chr10:99204400-99206600	Active TSS	H1 Cell Line	embryonic stem cell
4	chr10:99204400-99207200	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr10:99204600-99206600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:99204600-99207200	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr10:99204800-99206600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:99204800-99206600	Flanking Active TSS	Primary B cells from cord blood	blood
9	chr10:99204800-99206600	Active TSS	Psoas Muscle	Psoas
10	chr10:99204800-99206600	Active TSS	Right Atrium	heart
11	chr10:99204800-99206800	Active TSS	H9 Cell Line	embryonic stem cell
12	chr10:99204800-99206800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:99204800-99206800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:99204800-99206800	Active TSS	Ovary	ovary
15	chr10:99204800-99206800	Active TSS	A549	lung
16	chr10:99204800-99206800	Active TSS	GM12878-XiMat	blood
17	chr10:99204800-99206800	Active TSS	K562	blood
18	chr10:99204800-99207000	Active TSS	HSMMtube	muscle
19	chr10:99204800-99207200	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr10:99204800-99207400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:99204800-99207400	Active TSS	HSMM	muscle
22	chr10:99205000-99206200	Active TSS	Pancreas	Pancrea
23	chr10:99205000-99206400	Active TSS	Fetal Muscle Trunk	muscle
24	chr10:99205000-99206400	Active TSS	Lung	lung
25	chr10:99205000-99206600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:99205000-99206600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr10:99205000-99206600	Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr10:99205000-99206600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr10:99205000-99206600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:99205000-99206600	Active TSS	Aorta	Aorta
31	chr10:99205000-99206600	Active TSS	Esophagus	oesophagus
32	chr10:99205000-99206600	Active TSS	Fetal Brain Female	brain
33	chr10:99205000-99206600	Active TSS	Left Ventricle	heart
34	chr10:99205000-99206600	Active TSS	Sigmoid Colon	Sigmoid Colon
35	chr10:99205000-99206600	Active TSS	HMEC	breast
36	chr10:99205000-99206800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:99205000-99206800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr10:99205000-99206800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr10:99205000-99206800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:99205000-99206800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr10:99205000-99206800	Active TSS	Fetal Intestine Small	intestine
42	chr10:99205000-99206800	Active TSS	Hela-S3	cervix
43	chr10:99205000-99206800	Active TSS	NHDF-Ad	bronchial
44	chr10:99205000-99206800	Active TSS	NHLF	lung
45	chr10:99205000-99207000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:99205000-99207200	Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr10:99205000-99207200	Active TSS	iPS-15b Cell Line	embryonic stem cell
48	chr10:99205200-99206200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
49	chr10:99205200-99206200	Active TSS	Primary T helper cells PMA-I stimulated	--
50	chr10:99205200-99206200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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