Variant report

Variant	rs11189213
Chromosome Location	chr10:99179591-99179592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99167329..99170303-chr10:99178953..99180930,2	K562	blood:
2	chr10:99174155..99176594-chr10:99178151..99179962,2	MCF-7	breast:
3	chr10:99178412..99183286-chr10:99183902..99188289,4	K562	blood:
4	chr10:99158317..99161416-chr10:99176559..99179777,3	K562	blood:
5	chr10:99171315..99175453-chr10:99176654..99180468,6	K562	blood:
6	chr10:99176991..99182775-chr10:99183273..99189892,9	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL355490.1-1	chr10:99176179-99185666	NONHSAT015863

No data

Variant related genes	Relation type
ENSG00000231970	Chromatin interaction
ENSG00000171314	Chromatin interaction
ENSG00000224474	Chromatin interaction
ENSG00000052749	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10882935	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250338	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1889545	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs2861954	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4418736	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs4919098	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs60890987	0.80[ASN][1000 genomes]
rs928604	1.00[CHB][hapmap]
rs964733	1.00[CHB][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467440	chr10:99134784-99204791	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv552025	chr10:99134784-99204791	Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99161600-99185200	Weak transcription	Pancreas	Pancrea
2	chr10:99167400-99185200	Weak transcription	Fetal Lung	lung
3	chr10:99167400-99185400	Weak transcription	Gastric	stomach
4	chr10:99167600-99185200	Weak transcription	Fetal Intestine Small	intestine
5	chr10:99167600-99185200	Weak transcription	Left Ventricle	heart
6	chr10:99171400-99185200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:99173200-99182800	Weak transcription	HUVEC	blood vessel
8	chr10:99173800-99182400	Weak transcription	Esophagus	oesophagus
9	chr10:99174000-99185000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:99174200-99183000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr10:99174200-99184800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:99174200-99185000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:99175000-99182800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:99175200-99182200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:99175200-99182800	Weak transcription	NH-A	brain
16	chr10:99175200-99182800	Weak transcription	Osteobl	bone
17	chr10:99175400-99185000	Weak transcription	Brain Germinal Matrix	brain
18	chr10:99176600-99183000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:99176600-99185200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:99177800-99179800	Enhancers	Fetal Thymus	thymus
21	chr10:99177800-99185200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr10:99178000-99179800	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr10:99178200-99185200	Weak transcription	Ovary	ovary
24	chr10:99178400-99180400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:99178400-99180800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:99178400-99185000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:99178400-99185200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr10:99178400-99185200	Weak transcription	Right Ventricle	heart
29	chr10:99178400-99185200	Weak transcription	Small Intestine	intestine
30	chr10:99178600-99179600	Enhancers	Primary B cells from cord blood	blood
31	chr10:99178600-99179600	Enhancers	Fetal Muscle Trunk	muscle
32	chr10:99178600-99184800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr10:99178800-99182800	Weak transcription	GM12878-XiMat	blood
34	chr10:99178800-99185400	Weak transcription	Aorta	Aorta
35	chr10:99179000-99179600	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr10:99179000-99179800	Enhancers	HSMMtube	muscle
37	chr10:99179000-99184800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr10:99179000-99184800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr10:99179000-99185200	Weak transcription	Lung	lung
40	chr10:99179200-99179600	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr10:99179200-99179600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr10:99179200-99179600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr10:99179200-99179600	Enhancers	NHDF-Ad	bronchial
44	chr10:99179200-99179800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr10:99179200-99179800	Enhancers	Primary T cells fromperipheralblood	blood
46	chr10:99179200-99179800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr10:99179200-99179800	Weak transcription	Fetal Stomach	stomach
48	chr10:99179200-99180200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr10:99179200-99180600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr10:99179200-99180800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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