Variant report

Variant	rs29001266
Chromosome Location	chr10:99250232-99250233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99248992..99255448-chr10:99256116..99258644,11	K562	blood:
2	chr10:99248310..99253998-chr10:99255944..99258497,7	MCF-7	breast:
3	chr10:99249819..99251861-chr10:99254679..99256807,3	MCF-7	breast:
4	chr10:99248971..99251809-chr10:99252643..99255193,3	K562	blood:
5	chr10:99250054..99254215-chr10:99255711..99258162,4	K562	blood:

Variant related genes	Relation type
ENSG00000165886	Chromatin interaction
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11189254	0.82[ASN][1000 genomes]
rs17107905	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17112803	0.97[ASN][1000 genomes]
rs17112837	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3814552	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99215400-99254600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:99230800-99250400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:99237200-99254800	Weak transcription	Small Intestine	intestine
4	chr10:99239200-99254600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:99239400-99257400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:99239600-99250400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:99240800-99254600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:99240800-99256000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:99240800-99257400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:99241000-99250600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr10:99241000-99254600	Weak transcription	K562	blood
12	chr10:99241200-99250400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:99241200-99250400	Weak transcription	Fetal Lung	lung
14	chr10:99241200-99250400	Weak transcription	Gastric	stomach
15	chr10:99241200-99250400	Weak transcription	Ovary	ovary
16	chr10:99241200-99253600	Weak transcription	Fetal Kidney	kidney
17	chr10:99241200-99254600	Weak transcription	Esophagus	oesophagus
18	chr10:99241200-99254800	Weak transcription	Stomach Mucosa	stomach
19	chr10:99241200-99256800	Weak transcription	Colonic Mucosa	Colon
20	chr10:99241200-99256800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr10:99241400-99250400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:99241400-99250400	Weak transcription	Aorta	Aorta
23	chr10:99241400-99254200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr10:99241800-99252800	Weak transcription	Lung	lung
25	chr10:99241800-99256400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr10:99242000-99250400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr10:99242200-99252600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:99243600-99250600	Weak transcription	Liver	Liver
29	chr10:99243800-99250400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr10:99243800-99250400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:99243800-99250400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:99243800-99250400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:99243800-99250400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr10:99243800-99250400	Weak transcription	Pancreas	Pancrea
35	chr10:99243800-99250400	Weak transcription	Right Atrium	heart
36	chr10:99243800-99250600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr10:99243800-99250600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr10:99243800-99251000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr10:99243800-99253000	Weak transcription	NH-A	brain
40	chr10:99243800-99254000	Weak transcription	Right Ventricle	heart
41	chr10:99243800-99254000	Weak transcription	Spleen	Spleen
42	chr10:99243800-99254000	Weak transcription	HMEC	breast
43	chr10:99243800-99254400	Weak transcription	NHEK	skin
44	chr10:99243800-99254800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr10:99243800-99255000	Weak transcription	Duodenum Mucosa	Duodenum
46	chr10:99243800-99256000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr10:99244000-99251400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:99244000-99252600	Weak transcription	Fetal Stomach	stomach
49	chr10:99244000-99252800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr10:99244000-99254600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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