Variant report

Variant	rs1078692
Chromosome Location	chr14:77673341-77673342
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:121484532..121485202-chr14:77672954..77673851,2	MCF-7	breast:
2	chr14:77672224..77674882-chr14:77679223..77681930,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11159251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12881255	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12883963	0.83[CEU][hapmap]
rs12891631	0.86[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs12896627	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1467011	0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs1504521	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17105457	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1848402	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1861420	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs207802	0.98[ASN][1000 genomes]
rs207804	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2080384	0.84[CEU][hapmap]
rs2655996	0.95[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs2655997	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs2661828	0.80[CEU][hapmap];0.95[CHB][hapmap];0.89[ASN][1000 genomes]
rs4021320	0.83[CEU][hapmap]
rs4021325	0.96[ASN][1000 genomes]
rs4899641	0.84[CEU][hapmap]
rs56163542	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs70165	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7140198	0.87[ASN][1000 genomes]
rs7148579	0.88[CHB][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7154702	0.92[CEU][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8014408	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8014837	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8016243	0.81[CEU][hapmap]
rs8018250	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs888064	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77654200-77709400	Weak transcription	Esophagus	oesophagus
2	chr14:77654600-77679400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:77662000-77674400	Weak transcription	Brain Substantia Nigra	brain
4	chr14:77670800-77675000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:77671000-77679200	Weak transcription	Brain Germinal Matrix	brain
6	chr14:77671000-77685200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:77671000-77686200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr14:77671200-77674600	Weak transcription	Fetal Brain Male	brain
9	chr14:77671200-77678600	Weak transcription	Fetal Brain Female	brain
10	chr14:77671200-77679600	Weak transcription	Brain Angular Gyrus	brain
11	chr14:77671400-77673600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:77672200-77673600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:77672200-77676800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr14:77672400-77674600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr14:77672600-77673600	Enhancers	Brain Anterior Caudate	brain
16	chr14:77672800-77674600	Enhancers	Pancreatic Islets	Pancreatic Islet

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