Variant report

Variant	rs1467011
Chromosome Location	chr14:77665987-77665988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77665649..77667313-chr14:77786292..77789288,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100577	Chromatin interaction
ENSG00000009830	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1078692	0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs11159251	0.95[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs12881255	0.88[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12891631	0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs12896627	0.95[ASN][1000 genomes]
rs1504521	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17105457	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1848402	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1861420	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs207802	0.93[ASN][1000 genomes]
rs207804	0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs2540898	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2540900	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2655996	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2655997	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2661828	0.91[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs4021320	0.81[JPT][hapmap]
rs4021325	0.95[ASN][1000 genomes]
rs70165	0.88[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7140198	0.86[ASN][1000 genomes]
rs7148579	0.82[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7154702	0.85[ASN][1000 genomes]
rs7155226	0.81[AMR][1000 genomes]
rs8014837	0.90[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs8018250	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs888064	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77654000-77666800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr14:77654000-77670000	Weak transcription	Brain Angular Gyrus	brain
3	chr14:77654200-77709400	Weak transcription	Esophagus	oesophagus
4	chr14:77654600-77679400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr14:77657400-77667400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr14:77662000-77674400	Weak transcription	Brain Substantia Nigra	brain
7	chr14:77662200-77666000	Weak transcription	Fetal Brain Female	brain
8	chr14:77662400-77669800	Weak transcription	Brain Anterior Caudate	brain
9	chr14:77662400-77669800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr14:77662800-77669800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr14:77662800-77671600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:77663800-77668600	Weak transcription	Fetal Intestine Small	intestine
13	chr14:77664200-77667400	Enhancers	Fetal Brain Male	brain
14	chr14:77664800-77666400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:77665000-77666000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr14:77665200-77666000	Strong transcription	Brain Germinal Matrix	brain
17	chr14:77665800-77666000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland

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