Variant report

Variant	rs10789711
Chromosome Location	chr11:108909371-108909372
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:108909260-108909410	AG04449	skin:	n/a	n/a
2	GATA3	chr11:108908728-108909615	SK-N-SH	brain:	n/a	chr11:108908931-108908944 chr11:108909095-108909104
3	CTCF	chr11:108909240-108909390	HRPEpiC	eye:	n/a	n/a
4	CTCF	chr11:108909340-108909490	HRPEpiC	eye:	n/a	n/a
5	GATA3	chr11:108908551-108909670	SK-N-SH	brain:	n/a	chr11:108908931-108908944 chr11:108909095-108909104
6	EP300	chr11:108908856-108909692	SK-N-SH	brain:	n/a	n/a
7	PBX3	chr11:108908754-108909562	SK-N-SH	brain:	n/a	n/a
8	CTCF	chr11:108909229-108909468	NHEK	skin:	n/a	n/a
9	POLR2A	chr11:108909200-108909543	H1-neurons	neurons:	n/a	n/a
10	NFIC	chr11:108908858-108909597	SK-N-SH	brain:	n/a	n/a
11	CTCF	chr11:108909240-108909390	HFF	foreskin:	n/a	n/a
12	CTCF	chr11:108909240-108909390	HCM	heart:	n/a	n/a
13	CTCF	chr11:108909300-108909450	HMF	breast:	n/a	n/a
14	TCF12	chr11:108908557-108909677	SK-N-SH	brain:	n/a	chr11:108909544-108909554 chr11:108908788-108908798
15	CTCF	chr11:108909260-108909410	HCFaa	heart:	n/a	n/a
16	GATA2	chr11:108908655-108909551	HUVEC	blood vessel:	n/a	chr11:108908931-108908944 chr11:108909095-108909104
17	POLR2A	chr11:108909022-108909395	SK-N-SH	brain:	n/a	n/a
18	EP300	chr11:108909107-108909432	SK-N-SH_RA	brain:	n/a	n/a
19	CTCF	chr11:108909243-108909440	ProgFib	skin:	n/a	n/a
20	TEAD4	chr11:108908921-108909648	SK-N-SH	brain:	n/a	n/a
21	FOSL2	chr11:108908829-108909573	SK-N-SH	brain:	n/a	chr11:108909097-108909106 chr11:108909208-108909219 chr11:108909207-108909214
22	TCF12	chr11:108908823-108909614	SK-N-SH	brain:	n/a	chr11:108909544-108909554
23	POLR2A	chr11:108909181-108909435	HUVEC	blood vessel:	n/a	n/a
24	FOS	chr11:108908941-108909467	MCF10A-Er-Src	breast:	n/a	chr11:108909097-108909106 chr11:108909208-108909219 chr11:108909205-108909216 chr11:108909207-108909214
25	RAD21	chr11:108909107-108909577	SK-N-SH_RA	brain:	n/a	n/a
26	CTCF	chr11:108909280-108909430	HPAF	blood vessel:	n/a	n/a
27	CTCF	chr11:108909340-108909490	HPAF	blood vessel:	n/a	n/a
28	CTCF	chr11:108909280-108909409	HUVEC	blood vessel:	n/a	n/a
29	STAT3	chr11:108909065-108909394	MCF10A-Er-Src	breast:	n/a	chr11:108909206-108909215
30	RAD21	chr11:108909161-108909469	SK-N-SH_RA	brain:	n/a	n/a
31	PBX3	chr11:108908561-108909533	SK-N-SH	brain:	n/a	n/a
32	FOS	chr11:108908995-108909387	HUVEC	blood vessel:	n/a	chr11:108909097-108909106 chr11:108909208-108909219 chr11:108909205-108909216 chr11:108909207-108909214
33	CTCF	chr11:108909263-108909438	Gliobla	brain:	n/a	n/a
34	CTCF	chr11:108909280-108909430	HMF	breast:	n/a	n/a
35	CTCF	chr11:108909240-108909390	BJ	skin:	n/a	n/a
36	MYC	chr11:108909083-108909385	MCF10A-Er-Src	breast:	n/a	n/a
37	CTCF	chr11:108909257-108909447	Fibrobl	skin:	n/a	n/a
38	FOS	chr11:108908933-108909431	MCF10A-Er-Src	breast:	n/a	chr11:108909097-108909106 chr11:108909208-108909219 chr11:108909205-108909216 chr11:108909207-108909214
39	CTCF	chr11:108909240-108909390	AG04449	skin:	n/a	n/a
40	EP300	chr11:108908864-108909448	SK-N-SH_RA	brain:	n/a	n/a
41	CTCF	chr11:108909240-108909390	AG09319	gingival:	n/a	n/a
42	FOS	chr11:108909044-108909385	MCF10A-Er-Src	breast:	n/a	chr11:108909097-108909106 chr11:108909208-108909219 chr11:108909205-108909216 chr11:108909207-108909214
43	CTCF	chr11:108909240-108909390	HAc	cerebellar:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108905168..108907464-chr11:108909151..108912288,3	K562	blood:

Variant related genes	Relation type
ENSG00000255528	TF binding region

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1018227	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1018228	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10789704	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10789710	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10890922	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10890925	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10890926	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10890927	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10890928	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10890929	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10890936	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10890937	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10890938	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10890939	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10890940	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11212849	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11212856	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11212860	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11212868	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11212869	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11212870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11212871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11212872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11212873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11212874	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11212879	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11212880	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11501025	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12274468	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12361618	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12361808	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12361907	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12364782	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12365008	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12576067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12576075	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12576077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12576105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12577184	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12798106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1396907	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1396915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1828310	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1834457	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1834458	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1912233	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1974953	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2059538	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2136531	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2136535	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2884182	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34988101	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4133028	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57017030	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6589049	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6589050	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6589052	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7107024	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7114056	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7114217	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7130960	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7927335	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7939311	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7939681	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7944129	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1815918	chr11:108900487-108948487	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108905400-108909400	Weak transcription	NHDF-Ad	bronchial
2	chr11:108907000-108911000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:108907400-108917400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:108907600-108917200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:108908000-108909800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:108908000-108910400	Enhancers	Osteobl	bone
7	chr11:108908200-108911000	Enhancers	NHEK	skin
8	chr11:108908400-108910400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:108908400-108910400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:108908400-108910800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:108908400-108911000	Enhancers	HUVEC	blood vessel
12	chr11:108908600-108909600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:108908600-108909600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:108908600-108909800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr11:108908600-108909800	Enhancers	NH-A	brain
16	chr11:108908600-108910000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:108908600-108910000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:108908600-108910200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:108908600-108910400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:108908600-108910800	Enhancers	HMEC	breast
21	chr11:108908800-108909600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:108908800-108909600	Enhancers	Brain Germinal Matrix	brain
23	chr11:108908800-108909800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:108908800-108909800	Enhancers	HSMM	muscle
25	chr11:108909000-108909400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:108909000-108910200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:108909200-108910200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:108909200-108910200	Enhancers	Esophagus	oesophagus
29	chr11:108909200-108910800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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