Variant report

Variant	rs2059538
Chromosome Location	chr11:108886473-108886474
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1018227	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1018228	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10789704	0.81[AFR][1000 genomes]
rs10789710	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10789711	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10890922	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10890925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890929	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10890936	0.87[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs10890937	0.87[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs10890938	0.84[ASN][1000 genomes]
rs10890939	0.82[ASN][1000 genomes]
rs10890940	0.85[ASN][1000 genomes]
rs11212849	0.85[AFR][1000 genomes]
rs11212856	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11212860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212868	0.85[ASN][1000 genomes]
rs11212869	0.87[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs11212870	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11212871	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11212872	0.87[CHB][hapmap];0.83[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11212873	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11212874	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11212879	0.82[ASN][1000 genomes]
rs11212880	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11501025	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12274468	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12361618	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12361808	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12361907	0.85[ASN][1000 genomes]
rs12364782	0.85[ASN][1000 genomes]
rs12365008	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12576067	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12576075	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12576077	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12576105	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12577184	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12798106	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1396907	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1396915	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1828310	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1834457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1834458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1912233	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1974953	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2136531	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2136535	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2884182	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4133028	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs57017030	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6589049	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6589050	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7107024	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7114056	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7114217	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7130960	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7927335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939311	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7939681	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7944129	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108885400-108887800	Enhancers	HUVEC	blood vessel
2	chr11:108885600-108886800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr11:108885600-108887000	Enhancers	Osteobl	bone
4	chr11:108886200-108886600	Flanking Active TSS	NH-A	brain
5	chr11:108886200-108886800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:108886200-108887400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:108886200-108887600	Enhancers	NHEK	skin
8	chr11:108886200-108887800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:108886400-108886600	Enhancers	A549	lung
10	chr11:108886400-108886800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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