Variant report

Variant	rs10790366
Chromosome Location	chr11:119967769-119967770
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10892535	0.94[ASN][1000 genomes]
rs11217688	0.83[ASN][1000 genomes]
rs1632452	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1787027	0.97[ASN][1000 genomes]
rs1787028	0.99[ASN][1000 genomes]
rs1790471	0.99[ASN][1000 genomes]
rs605833	0.97[ASN][1000 genomes]
rs613004	0.97[ASN][1000 genomes]
rs664590	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv508657	chr11:119891578-119971212	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119965400-119968000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:119965800-119968000	Enhancers	Brain Anterior Caudate	brain
3	chr11:119965800-119970400	Enhancers	Fetal Intestine Large	intestine
4	chr11:119966000-119969000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:119966000-119969000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:119966200-119968200	Enhancers	Brain Germinal Matrix	brain
7	chr11:119966400-119970000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:119966600-119967800	Weak transcription	Brain Angular Gyrus	brain
9	chr11:119966600-119968000	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr11:119966600-119968200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:119966600-119970000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:119966800-119968000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr11:119966800-119978200	Weak transcription	Brain Substantia Nigra	brain
14	chr11:119967000-119968600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr11:119967000-119968600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
16	chr11:119967000-119969000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:119967000-119969200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
18	chr11:119967000-119969200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:119967200-119967800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:119967200-119968000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:119967200-119968400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:119967200-119968600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
23	chr11:119967200-119968800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
24	chr11:119967200-119969000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
25	chr11:119967400-119967800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:119967400-119967800	Flanking Active TSS	Fetal Intestine Small	intestine
27	chr11:119967400-119968000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:119967400-119968200	Bivalent Enhancer	Fetal Stomach	stomach
29	chr11:119967400-119968200	Enhancers	Placenta Amnion	Placenta Amnion
30	chr11:119967400-119968200	Bivalent Enhancer	HepG2	liver
31	chr11:119967400-119968200	Enhancers	K562	blood
32	chr11:119967400-119968400	Enhancers	Fetal Kidney	kidney
33	chr11:119967600-119967800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
34	chr11:119967600-119968000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
35	chr11:119967600-119968200	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links