Variant report

Variant	rs11217688
Chromosome Location	chr11:119965248-119965249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10790366	0.83[ASN][1000 genomes]
rs1632452	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1787027	0.83[ASN][1000 genomes]
rs1787028	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1790471	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs605833	0.83[ASN][1000 genomes]
rs613004	0.83[ASN][1000 genomes]
rs664590	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv508657	chr11:119891578-119971212	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119961800-119966000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:119962400-119965800	Weak transcription	Esophagus	oesophagus
3	chr11:119963200-119967000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:119963400-119965400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:119963400-119965400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:119963400-119965600	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:119963400-119966200	Weak transcription	Fetal Intestine Small	intestine
8	chr11:119964200-119965400	Weak transcription	Brain Substantia Nigra	brain
9	chr11:119964200-119965800	Weak transcription	Fetal Intestine Large	intestine
10	chr11:119964200-119966600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:119964400-119965400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:119964400-119965800	Weak transcription	Brain Anterior Caudate	brain
13	chr11:119965200-119966000	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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