Variant report

Variant	rs10790450
Chromosome Location	chr11:121566963-121566964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10892770	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10892771	0.82[AMR][1000 genomes]
rs11218381	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11218382	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1847303	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2174159	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121559200-121567000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:121560400-121567000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:121560400-121567400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:121561000-121570200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:121563400-121567000	Weak transcription	HSMM	muscle
6	chr11:121565400-121571000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:121566400-121568800	Enhancers	Fetal Brain Male	brain
8	chr11:121566600-121567000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr11:121566600-121567000	Flanking Active TSS	Brain Substantia Nigra	brain
10	chr11:121566600-121567000	Enhancers	Right Atrium	heart
11	chr11:121566600-121567200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr11:121566600-121567200	Enhancers	Brain Anterior Caudate	brain
13	chr11:121566600-121567200	Enhancers	Colon Smooth Muscle	Colon
14	chr11:121566600-121567400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr11:121566600-121567400	Active TSS	Brain Angular Gyrus	brain
16	chr11:121566600-121567400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:121566600-121567600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:121566600-121567600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:121566600-121567600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:121566600-121568200	Enhancers	Fetal Muscle Leg	muscle
21	chr11:121566600-121568200	Enhancers	Fetal Stomach	stomach
22	chr11:121566800-121567000	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr11:121566800-121567000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:121566800-121567000	Enhancers	Aorta	Aorta
25	chr11:121566800-121567000	Flanking Active TSS	Brain Cingulate Gyrus	brain
26	chr11:121566800-121567000	Enhancers	Brain Germinal Matrix	brain
27	chr11:121566800-121567000	Enhancers	Duodenum Mucosa	Duodenum
28	chr11:121566800-121567000	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr11:121566800-121567000	Enhancers	Fetal Heart	heart
30	chr11:121566800-121567000	Enhancers	Psoas Muscle	Psoas
31	chr11:121566800-121567000	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr11:121566800-121567000	Enhancers	HepG2	liver
33	chr11:121566800-121567000	Enhancers	HMEC	breast
34	chr11:121566800-121567000	Enhancers	HSMMtube	muscle
35	chr11:121566800-121567000	Enhancers	Osteobl	bone
36	chr11:121566800-121567200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr11:121566800-121567200	Enhancers	Muscle Satellite Cultured Cells	--
38	chr11:121566800-121567600	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr11:121566800-121567600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:121566800-121567600	Flanking Active TSS	Brain Hippocampus Middle	brain
41	chr11:121566800-121567600	Enhancers	Fetal Intestine Large	intestine
42	chr11:121566800-121567600	Enhancers	Fetal Intestine Small	intestine
43	chr11:121566800-121567600	Enhancers	Fetal Muscle Trunk	muscle
44	chr11:121566800-121567800	Flanking Active TSS	Fetal Brain Female	brain
45	chr11:121566800-121568000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:121566800-121568000	Enhancers	NH-A	brain
47	chr11:121566800-121568400	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr11:121566800-121568600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr11:121566800-121570200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links