Variant report

Variant	rs10892770
Chromosome Location	chr11:121563587-121563588
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10790450	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10892771	0.81[AMR][1000 genomes]
rs11218381	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11218382	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1847303	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121559000-121566600	Weak transcription	Pancreas	Pancrea
2	chr11:121559200-121567000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:121559400-121565800	Weak transcription	Fetal Heart	heart
4	chr11:121559800-121566800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:121560200-121566800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:121560400-121566600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:121560400-121566800	Weak transcription	NH-A	brain
8	chr11:121560400-121567000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:121560400-121567400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:121561000-121570200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:121562600-121563600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:121562800-121564000	Enhancers	Brain Cingulate Gyrus	brain
13	chr11:121563200-121565400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:121563200-121566800	Weak transcription	Osteobl	bone
15	chr11:121563400-121565000	Weak transcription	Brain Angular Gyrus	brain
16	chr11:121563400-121565400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:121563400-121565600	Weak transcription	Brain Substantia Nigra	brain
18	chr11:121563400-121565800	Weak transcription	Brain Hippocampus Middle	brain
19	chr11:121563400-121566600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:121563400-121566600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:121563400-121566600	Weak transcription	Brain Anterior Caudate	brain
22	chr11:121563400-121566600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr11:121563400-121566600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:121563400-121566600	Weak transcription	HepG2	liver
25	chr11:121563400-121566800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:121563400-121566800	Weak transcription	HSMMtube	muscle
27	chr11:121563400-121567000	Weak transcription	HSMM	muscle

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