Variant report

Variant	rs10791828
Chromosome Location	chr11:65599052-65599053
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65599027..65600852-chr11:65601394..65604291,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CFL1-2	chr11:65598769-65599241	NONHSAT022224
2	lnc-CFL1-2	chr11:65598769-65600138	NONHSAT022225

Variant related genes	Relation type
ENSG00000172803	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10896053	0.82[JPT][hapmap]
rs11227307	0.85[AMR][1000 genomes]
rs1204771	0.83[JPT][hapmap]
rs1204772	0.82[JPT][hapmap]
rs13817	0.85[AMR][1000 genomes]
rs1939212	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4621	0.85[AMR][1000 genomes]
rs508548	0.85[AMR][1000 genomes]
rs521004	0.83[JPT][hapmap]
rs538394	0.81[CEU][hapmap];0.85[AMR][1000 genomes]
rs545500	0.84[AMR][1000 genomes]
rs558114	0.81[CEU][hapmap];0.85[AMR][1000 genomes]
rs601887	0.82[JPT][hapmap]
rs621348	0.82[JPT][hapmap]
rs630303	0.81[CEU][hapmap];0.85[AMR][1000 genomes]
rs630755	0.85[AMR][1000 genomes]
rs633877	0.85[AMR][1000 genomes]
rs635375	0.81[CEU][hapmap];0.85[AMR][1000 genomes]
rs648732	0.81[CEU][hapmap];0.85[AMR][1000 genomes]
rs652021	0.81[CEU][hapmap];0.85[AMR][1000 genomes]
rs656040	0.85[AMR][1000 genomes]
rs665306	0.85[AMR][1000 genomes]
rs667555	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs668356	0.81[CEU][hapmap];0.85[AMR][1000 genomes]
rs679147	0.82[CEU][hapmap]
rs7113768	0.83[JPT][hapmap]
rs7114014	0.92[CEU][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes]
rs7114237	0.82[JPT][hapmap]
rs7114298	0.87[AMR][1000 genomes]
rs7125986	0.83[AMR][1000 genomes]
rs7947741	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
2	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
3	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
7	nsv555215	chr11:65581579-65676516	Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10791828	SNX32	cis	Artery Tibial	GTEx
rs10791828	FIBP	Cis_1M	lymphoblastoid	RTeQTL
rs10791828	SNX32	cis	Thyroid	GTEx
rs10791828	SNX32	cis	Whole Blood	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65585800-65600200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:65585800-65600600	Weak transcription	Small Intestine	intestine
3	chr11:65591600-65600400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:65595200-65600200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:65595600-65600400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr11:65596200-65600200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:65596200-65600400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:65597200-65600200	Weak transcription	Fetal Intestine Large	intestine
9	chr11:65598400-65599200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:65598400-65600400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr11:65598800-65599400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:65599000-65600400	Enhancers	Fetal Intestine Small	intestine

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