Variant report

Variant	rs10791958
Chromosome Location	chr11:67897205-67897206
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:67897095-67897220	HepG2	liver:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCIRG1-2	chr11:67896908-67897549	XLOC_009183

Variant related genes	Relation type
ENSG00000255236	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10896299	0.84[JPT][hapmap]
rs2511439	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[EUR][1000 genomes]
rs2511474	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3763945	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[EUR][1000 genomes]
rs4337046	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7127090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72926470	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427892	chr11:67451649-67926562	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
2	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67889600-67897400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:67889800-67897400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:67889800-67897600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr11:67892000-67897800	Enhancers	Pancreas	Pancrea
5	chr11:67894000-67898000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:67894600-67897400	Enhancers	Lung	lung
7	chr11:67896200-67897400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:67896200-67897800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr11:67896600-67897400	Enhancers	Colon Smooth Muscle	Colon
10	chr11:67896600-67897600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:67896600-67897800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr11:67896600-67897800	Enhancers	Fetal Intestine Large	intestine
13	chr11:67896600-67897800	Enhancers	Fetal Intestine Small	intestine
14	chr11:67896800-67897400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:67896800-67897400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:67896800-67897600	Enhancers	HepG2	liver
17	chr11:67896800-67897800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr11:67896800-67900800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:67897000-67897800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
20	chr11:67897000-67905000	Weak transcription	Liver	Liver
21	chr11:67897200-67897600	Weak transcription	Esophagus	oesophagus
22	chr11:67897200-67898600	Weak transcription	Hela-S3	cervix
23	chr11:67897200-67907800	Weak transcription	Fetal Heart	heart
24	chr11:67897200-67908200	Weak transcription	Gastric	stomach

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