Variant report

Variant	rs2511474
Chromosome Location	chr11:67908192-67908193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:67893937..67896005-chr11:67908113..67910467,2	MCF-7	breast:
2	chr11:67907520..67909318-chr11:67911352..67914031,2	K562	blood:
3	chr11:67894876..67897320-chr11:67906822..67909405,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255236	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10791958	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2511439	0.82[EUR][1000 genomes]
rs2511477	0.88[ASN][1000 genomes]
rs4337046	0.82[EUR][1000 genomes]
rs7127090	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427892	chr11:67451649-67926562	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
2	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67897200-67908200	Weak transcription	Gastric	stomach
2	chr11:67899000-67912200	Weak transcription	Hela-S3	cervix
3	chr11:67905800-67909400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:67906000-67908600	Weak transcription	Fetal Lung	lung
5	chr11:67906000-67912600	Weak transcription	Ovary	ovary
6	chr11:67906000-67912800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr11:67906000-67912800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:67906200-67908200	Weak transcription	Liver	Liver
9	chr11:67906400-67912200	Weak transcription	A549	lung
10	chr11:67906800-67908200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:67907200-67908200	Enhancers	K562	blood
12	chr11:67907200-67911000	Enhancers	Primary hematopoietic stem cells	blood
13	chr11:67907400-67908200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr11:67907400-67911000	Enhancers	Pancreas	Pancrea
15	chr11:67907600-67909600	Enhancers	Brain Substantia Nigra	brain
16	chr11:67907600-67910800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr11:67907800-67908400	Enhancers	Fetal Heart	heart
18	chr11:67907800-67909000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
19	chr11:67907800-67909000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr11:67907800-67909200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr11:67907800-67909800	Enhancers	Brain Cingulate Gyrus	brain
22	chr11:67907800-67910000	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr11:67907800-67910400	Enhancers	Brain Hippocampus Middle	brain
24	chr11:67908000-67908200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:67908000-67908400	Enhancers	Fetal Intestine Small	intestine
26	chr11:67908000-67908600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
27	chr11:67908000-67908800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:67908000-67909600	Enhancers	Fetal Muscle Trunk	muscle
29	chr11:67908000-67909800	Enhancers	Brain Anterior Caudate	brain
30	chr11:67908000-67910000	Enhancers	Brain Angular Gyrus	brain
31	chr11:67908000-67910000	Enhancers	Brain Germinal Matrix	brain
32	chr11:67908000-67910000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:67908000-67910200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:67908000-67910200	Enhancers	Right Ventricle	heart
35	chr11:67908000-67910800	Enhancers	Stomach Mucosa	stomach
36	chr11:67908000-67911000	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links