Variant report

Variant	rs10792071
Chromosome Location	chr11:56735739-56735740
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10466677	0.95[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10896561	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10896563	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10896565	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap]
rs10896566	0.94[ASN][1000 genomes]
rs10896568	0.90[ASN][1000 genomes]
rs11228841	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11228842	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11228881	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12365853	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045889	chr11:56624365-56737435	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
3	esv3445980	chr11:56723866-56748461	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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