Variant report

Variant	rs10896568
Chromosome Location	chr11:56839365-56839366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10466677	0.95[ASN][1000 genomes]
rs10792071	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10896561	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs10896563	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10896565	1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap]
rs10896566	0.94[ASN][1000 genomes]
rs11228881	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12365853	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10896568	TBC1D4	trans	lymphoblastoid	seeQTL
rs10896568	TNKS1BP1	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56837600-56841200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:56837800-56839400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:56838000-56839400	Weak transcription	HMEC	breast
4	chr11:56838200-56839800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:56838800-56839600	Enhancers	A549	lung
6	chr11:56839000-56839600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:56839000-56839600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:56839000-56841000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:56839200-56839400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:56839200-56839800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:56839200-56841200	Enhancers	Hela-S3	cervix
12	chr11:56839200-56841200	Enhancers	NH-A	brain
13	chr11:56839200-56841200	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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