Variant report

Variant	rs10792823
Chromosome Location	chr11:85767914-85767915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85764603..85768167-chr11:85770443..85773239,4	K562	blood:
2	chr11:85763399..85766390-chr11:85766683..85769520,2	K562	blood:
3	chr11:85763624..85765571-chr11:85766544..85768269,2	MCF-7	breast:
4	chr11:85759677..85764331-chr11:85767246..85771680,6	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10501604	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10501608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10751133	0.87[ASN][1000 genomes]
rs10792820	0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.83[ASN][1000 genomes]
rs10792821	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10898430	0.85[ASN][1000 genomes]
rs10898432	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11234486	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11234487	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11234491	0.91[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes]
rs11234495	0.81[ASN][1000 genomes]
rs11234501	0.81[ASN][1000 genomes]
rs11234505	0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.82[ASN][1000 genomes]
rs11234520	0.88[ASN][1000 genomes]
rs12224233	0.80[ASN][1000 genomes]
rs1965400	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59544396	0.81[ASN][1000 genomes]
rs7114678	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7131120	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs713346	0.90[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv898054	chr11:85683554-85772636	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv468774	chr11:85688209-85775059	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv555644	chr11:85688209-85775059	Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv1829985	chr11:85740319-85789350	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85752400-85768400	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr11:85752800-85768200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr11:85752800-85776400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:85753200-85768000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr11:85754400-85768200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:85756000-85776000	Weak transcription	Esophagus	oesophagus
7	chr11:85756600-85775400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:85758600-85774400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:85759000-85773600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:85759400-85768200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr11:85759400-85773800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr11:85759400-85774400	Weak transcription	NHEK	skin
13	chr11:85759800-85772600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:85760200-85773000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:85760400-85772000	Weak transcription	Pancreas	Pancrea
16	chr11:85761000-85768800	Genic enhancers	K562	blood
17	chr11:85761400-85768000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr11:85762200-85773800	Weak transcription	NHDF-Ad	bronchial
19	chr11:85762400-85773000	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr11:85763200-85772800	Weak transcription	NHLF	lung
21	chr11:85763800-85768000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:85764000-85775000	Weak transcription	Fetal Brain Female	brain
23	chr11:85764200-85774800	Weak transcription	HMEC	breast
24	chr11:85764200-85775200	Weak transcription	Fetal Intestine Small	intestine
25	chr11:85764400-85769400	Weak transcription	Small Intestine	intestine
26	chr11:85764400-85770400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:85764400-85771600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr11:85764400-85772600	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr11:85764400-85777000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:85764600-85769400	Weak transcription	Stomach Mucosa	stomach
31	chr11:85764600-85770600	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr11:85765000-85773000	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr11:85765000-85773200	Weak transcription	Lung	lung
34	chr11:85765400-85769400	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr11:85765600-85768800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:85765600-85768800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr11:85765600-85770000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr11:85765600-85770400	Weak transcription	Gastric	stomach
39	chr11:85765600-85770600	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr11:85765600-85770600	Weak transcription	Ovary	ovary
41	chr11:85765600-85771200	Weak transcription	HepG2	liver
42	chr11:85765600-85771200	Weak transcription	HUVEC	blood vessel
43	chr11:85765600-85772400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr11:85765600-85773200	Weak transcription	Spleen	Spleen
45	chr11:85765600-85773800	Weak transcription	Dnd41	blood
46	chr11:85765600-85775400	Weak transcription	Placenta	Placenta
47	chr11:85765600-85777800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr11:85765800-85768400	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr11:85765800-85769400	Weak transcription	Rectal Smooth Muscle	rectum
50	chr11:85765800-85769400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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