Variant report

Variant	rs11234491
Chromosome Location	chr11:85664503-85664504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85663084..85664882-chr11:85955356..85956951,2	K562	blood:
2	chr11:85659757..85662589-chr11:85664114..85665919,2	K562	blood:
3	chr11:85663607..85666587-chr11:86015226..86016933,2	K562	blood:
4	chr11:85658382..85661257-chr11:85664114..85666367,2	K562	blood:

Variant related genes	Relation type
ENSG00000074266	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10501604	0.93[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[TSI][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10501608	0.93[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap]
rs10751133	0.84[ASN][1000 genomes]
rs10792820	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10792821	0.95[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap];0.84[ASN][1000 genomes]
rs10792823	0.80[EUR][1000 genomes]
rs10898426	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10898427	0.94[ASN][1000 genomes]
rs10898430	0.80[EUR][1000 genomes]
rs11234486	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11234487	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11234495	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11234501	0.90[ASN][1000 genomes]
rs11234505	0.95[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap];0.88[ASN][1000 genomes]
rs12224233	0.91[ASN][1000 genomes]
rs1892943	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1965400	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57929351	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59544396	0.90[ASN][1000 genomes]
rs7114678	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7131120	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs713346	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7938033	0.85[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1053808	chr11:85588919-85757693	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1053599	chr11:85641619-85684353	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv1040567	chr11:85641619-85684935	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85646600-85667400	Weak transcription	Gastric	stomach
2	chr11:85652800-85668800	Weak transcription	Small Intestine	intestine
3	chr11:85656000-85679800	Weak transcription	Fetal Brain Male	brain
4	chr11:85657200-85665600	Weak transcription	Lung	lung
5	chr11:85657600-85665600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:85657600-85666600	Weak transcription	Spleen	Spleen
7	chr11:85658400-85666600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:85658400-85667400	Weak transcription	Pancreas	Pancrea
9	chr11:85658600-85664600	Weak transcription	Fetal Thymus	thymus
10	chr11:85658600-85665400	Weak transcription	Aorta	Aorta
11	chr11:85658600-85665400	Weak transcription	Left Ventricle	heart
12	chr11:85658600-85667400	Weak transcription	Esophagus	oesophagus
13	chr11:85658600-85673000	Weak transcription	Right Ventricle	heart
14	chr11:85658800-85664600	Weak transcription	Thymus	Thymus
15	chr11:85658800-85665400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr11:85659000-85665000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr11:85659400-85664600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr11:85659400-85665400	Weak transcription	Right Atrium	heart
19	chr11:85659400-85665400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:85659400-85666400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:85659400-85745800	Weak transcription	Stomach Mucosa	stomach
22	chr11:85659600-85664600	Weak transcription	Fetal Stomach	stomach
23	chr11:85659600-85666200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr11:85659600-85666400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:85659800-85666800	Weak transcription	Fetal Lung	lung
26	chr11:85660000-85666400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr11:85660200-85664600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr11:85660200-85664600	Weak transcription	Brain Substantia Nigra	brain
29	chr11:85660200-85664600	Weak transcription	Fetal Kidney	kidney
30	chr11:85660200-85664800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr11:85660200-85665000	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr11:85660200-85666200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr11:85660200-85666400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr11:85660200-85666400	Weak transcription	Brain Hippocampus Middle	brain
35	chr11:85660200-85666400	Weak transcription	A549	lung
36	chr11:85660200-85666400	Weak transcription	Hela-S3	cervix
37	chr11:85660200-85666600	Weak transcription	HUVEC	blood vessel
38	chr11:85660200-85670800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:85660400-85664600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:85660400-85666400	Weak transcription	HMEC	breast
41	chr11:85660400-85666600	Weak transcription	NHEK	skin
42	chr11:85660400-85667400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr11:85660600-85664800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr11:85660600-85665000	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr11:85662400-85664600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr11:85662400-85666200	Weak transcription	HepG2	liver
47	chr11:85662600-85666000	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr11:85663000-85666400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr11:85663200-85665200	Weak transcription	Fetal Brain Female	brain
50	chr11:85663400-85692000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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