Variant report

Variant	rs1892943
Chromosome Location	chr11:85665172-85665173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85661662..85663622-chr11:85665077..85667243,2	K562	blood:
2	chr11:85664911..85667444-chr11:85667862..85673209,4	K562	blood:
3	chr11:85659757..85662589-chr11:85664114..85665919,2	K562	blood:
4	chr11:85664784..85666650-chr11:85673268..85675684,2	K562	blood:
5	chr11:85664911..85667241-chr11:85670910..85673209,2	K562	blood:
6	chr11:85663607..85666587-chr11:86015226..86016933,2	K562	blood:
7	chr11:85658382..85661257-chr11:85664114..85666367,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10501604	0.95[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10501608	0.90[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap]
rs10751133	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10792820	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10792821	0.89[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10898426	0.95[ASN][1000 genomes]
rs10898427	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10898430	0.98[EUR][1000 genomes]
rs10898432	0.82[EUR][1000 genomes]
rs11234486	0.81[ASN][1000 genomes]
rs11234487	0.81[ASN][1000 genomes]
rs11234491	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.93[MEX][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11234495	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11234501	0.90[ASN][1000 genomes]
rs11234505	0.89[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11234520	0.90[EUR][1000 genomes]
rs12224233	0.90[ASN][1000 genomes]
rs1965400	0.81[ASN][1000 genomes]
rs57929351	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59544396	0.90[ASN][1000 genomes]
rs7114678	0.83[ASN][1000 genomes]
rs7131120	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs713346	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7938033	0.93[ASW][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1053808	chr11:85588919-85757693	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1053599	chr11:85641619-85684353	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv1040567	chr11:85641619-85684935	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85646600-85667400	Weak transcription	Gastric	stomach
2	chr11:85652800-85668800	Weak transcription	Small Intestine	intestine
3	chr11:85656000-85679800	Weak transcription	Fetal Brain Male	brain
4	chr11:85657200-85665600	Weak transcription	Lung	lung
5	chr11:85657600-85665600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:85657600-85666600	Weak transcription	Spleen	Spleen
7	chr11:85658400-85666600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:85658400-85667400	Weak transcription	Pancreas	Pancrea
9	chr11:85658600-85665400	Weak transcription	Aorta	Aorta
10	chr11:85658600-85665400	Weak transcription	Left Ventricle	heart
11	chr11:85658600-85667400	Weak transcription	Esophagus	oesophagus
12	chr11:85658600-85673000	Weak transcription	Right Ventricle	heart
13	chr11:85658800-85665400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr11:85659400-85665400	Weak transcription	Right Atrium	heart
15	chr11:85659400-85665400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:85659400-85666400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr11:85659400-85745800	Weak transcription	Stomach Mucosa	stomach
18	chr11:85659600-85666200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:85659600-85666400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:85659800-85666800	Weak transcription	Fetal Lung	lung
21	chr11:85660000-85666400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:85660200-85666200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr11:85660200-85666400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr11:85660200-85666400	Weak transcription	Brain Hippocampus Middle	brain
25	chr11:85660200-85666400	Weak transcription	A549	lung
26	chr11:85660200-85666400	Weak transcription	Hela-S3	cervix
27	chr11:85660200-85666600	Weak transcription	HUVEC	blood vessel
28	chr11:85660200-85670800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:85660400-85666400	Weak transcription	HMEC	breast
30	chr11:85660400-85666600	Weak transcription	NHEK	skin
31	chr11:85660400-85667400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:85662400-85666200	Weak transcription	HepG2	liver
33	chr11:85662600-85666000	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr11:85663000-85666400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr11:85663200-85665200	Weak transcription	Fetal Brain Female	brain
36	chr11:85663400-85692000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:85663600-85666000	Weak transcription	Fetal Heart	heart
38	chr11:85663600-85666800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr11:85663800-85666400	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr11:85663800-85666400	Weak transcription	K562	blood
41	chr11:85663800-85740200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr11:85664200-85665800	ZNF genes & repeats	GM12878-XiMat	blood
43	chr11:85664200-85666000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
44	chr11:85664200-85666000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:85664200-85666400	Strong transcription	Brain Anterior Caudate	brain
46	chr11:85664200-85666800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:85664200-85668200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:85664200-85673000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:85664400-85665200	Enhancers	NHDF-Ad	bronchial
50	chr11:85664400-85665400	Strong transcription	NH-A	brain

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