Variant report

Variant	rs10793569
Chromosome Location	chr10:45420416-45420417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr10:45420068-45420457	H1-hESC	embryonic stem cell:	n/a	n/a
2	E2F6	chr10:45420049-45421121	H1-hESC	embryonic stem cell:	n/a	n/a
3	GTF2F1	chr10:45420289-45420924	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45419232..45422212-chr10:45424408..45426713,2	K562	blood:
2	chr10:45359809..45360961-chr10:45420280..45421173,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234504	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10751362	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10793566	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10793567	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs10793568	0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs10900130	0.99[EUR][1000 genomes]
rs10900132	1.00[CEU][hapmap];0.96[CHB][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11239281	0.99[EUR][1000 genomes]
rs1332623	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2065465	0.89[JPT][hapmap]
rs4396240	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4948646	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4948929	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4948931	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4948933	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6593449	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs6593450	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7067692	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7068765	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7095112	0.81[JPT][hapmap]
rs7096289	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7100544	0.84[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7477198	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7923073	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7923091	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs867317	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs914695	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs914696	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv466909	chr10:45408011-45446791	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv550714	chr10:45408011-45446791	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3374788	chr10:45419346-45423644	Genic enhancers Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv818757	chr10:45420076-45431321	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45407800-45422800	Weak transcription	Ovary	ovary
2	chr10:45410200-45430400	Weak transcription	Gastric	stomach
3	chr10:45413400-45428200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:45417000-45434000	Weak transcription	Fetal Brain Female	brain
5	chr10:45417800-45422400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:45418800-45420800	Weak transcription	Spleen	Spleen
7	chr10:45418800-45424800	Weak transcription	Colonic Mucosa	Colon
8	chr10:45419400-45420800	Enhancers	Fetal Thymus	thymus
9	chr10:45419600-45421000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:45419800-45420600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:45419800-45421000	Enhancers	Fetal Muscle Trunk	muscle
12	chr10:45419800-45421200	Enhancers	Fetal Muscle Leg	muscle
13	chr10:45420000-45421200	Enhancers	HSMMtube	muscle
14	chr10:45420200-45420800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr10:45420200-45421000	Enhancers	Lung	lung
16	chr10:45420200-45421000	Enhancers	Pancreas	Pancrea
17	chr10:45420200-45422200	Enhancers	HepG2	liver
18	chr10:45420400-45420600	Enhancers	Fetal Lung	lung
19	chr10:45420400-45420800	Enhancers	Fetal Kidney	kidney
20	chr10:45420400-45421000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr10:45420400-45428000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr10:45420400-45428200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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