Variant report

Variant	rs4396240
Chromosome Location	chr10:45438847-45438848
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45436735..45439619-chr10:45441903..45444431,2	MCF-7	breast:
2	chr10:45438306..45442346-chr10:45451972..45455463,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107551	Chromatin interaction
ENSG00000224812	Chromatin interaction
ENSG00000273363	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10751362	1.00[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10793566	0.86[CHB][hapmap]
rs10793567	0.81[CHB][hapmap]
rs10793568	0.86[CHB][hapmap]
rs10793569	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10900130	0.86[EUR][1000 genomes]
rs10900132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11239281	0.86[EUR][1000 genomes]
rs1332623	0.86[EUR][1000 genomes]
rs2026426	0.95[EUR][1000 genomes]
rs4948646	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948929	0.86[CHB][hapmap]
rs4948931	0.83[CEU][hapmap];0.95[CHB][hapmap];0.80[CHD][hapmap];0.84[GIH][hapmap];0.85[ASN][1000 genomes]
rs4948933	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6593449	0.86[CHB][hapmap]
rs7067692	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7068765	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7096289	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7100544	0.91[CHB][hapmap]
rs7477198	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs7923073	0.91[CHB][hapmap]
rs7923091	0.91[CHB][hapmap]
rs867317	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs914695	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs914696	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv466909	chr10:45408011-45446791	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv550714	chr10:45408011-45446791	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45431200-45453200	Weak transcription	Gastric	stomach
2	chr10:45436600-45440600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr10:45438800-45441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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