Variant report

Variant	rs10794720
Chromosome Location	chr10:1156165-1156166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:1154681..1157651-chr10:1165261..1167204,2	MCF-7	breast:
2	chr10:1156155..1156681-chr10:1410890..1411623,2	K562	blood:
3	chr10:1150337..1153151-chr10:1154586..1158431,3	K562	blood:
4	chr10:1155977..1157935-chr10:1333805..1335965,2	MCF-7	breast:
5	chr10:1153340..1156463-chr10:1165823..1169651,3	K562	blood:
6	chr10:1155649..1156639-chr10:1410710..1411699,3	MCF-7	breast:
7	chr10:1155917..1158067-chr10:1158986..1161390,4	MCF-7	breast:
8	chr10:1155889..1157522-chr10:1215950..1218496,2	K562	blood:
9	chr10:1155742..1156296-chr10:1463167..1463763,2	MCF-7	breast:

No data

Extended variants
information (count: 64 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10047269	0.92[EUR][1000 genomes]
rs10047382	0.92[EUR][1000 genomes]
rs10047383	0.81[EUR][1000 genomes]
rs10219038	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1079389	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1079390	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11250242	1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.88[EUR][1000 genomes]
rs11250249	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11250252	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11250264	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11250275	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11816485	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11818314	1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11819178	0.83[EUR][1000 genomes]
rs11819230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12241632	1.00[CHB][hapmap]
rs12247779	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12247818	1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[EUR][1000 genomes]
rs12250141	0.96[EUR][1000 genomes]
rs12268949	0.92[EUR][1000 genomes]
rs12359250	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13377037	1.00[CHB][hapmap]
rs17155821	1.00[CHB][hapmap];0.88[GIH][hapmap]
rs17155886	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2279256	1.00[CEU][hapmap];0.85[JPT][hapmap];0.98[EUR][1000 genomes]
rs2387299	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2387300	0.96[ASN][1000 genomes]
rs3793776	0.90[CHB][hapmap]
rs3793780	1.00[CHB][hapmap]
rs3793781	1.00[CHB][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap]
rs3886474	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41299206	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56004802	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57514701	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59377495	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61571350	0.92[EUR][1000 genomes]
rs7071670	0.92[EUR][1000 genomes]
rs7093915	1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[EUR][1000 genomes]
rs7100114	0.90[EUR][1000 genomes]
rs74117685	0.84[EUR][1000 genomes]
rs74117831	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74117848	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74117849	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74117850	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74120451	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7922760	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540386	chr10:224406-1197416	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv533861	chr10:945438-1382068	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv530117	chr10:945438-1729634	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv540408	chr10:955835-1260680	Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv817532	chr10:964660-1885945	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	nsv1050577	chr10:986723-1277854	Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
10	nsv540409	chr10:986723-1277854	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
11	nsv949405	chr10:1010464-1376105	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
12	nsv894722	chr10:1058837-1274538	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
13	nsv1046220	chr10:1064024-1188998	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
14	nsv894723	chr10:1073684-1259485	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
15	nsv894725	chr10:1110464-1421516	Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
16	nsv1054432	chr10:1115626-1230431	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
17	nsv1041498	chr10:1117200-1760190	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
18	nsv894726	chr10:1151620-1216861	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Chronic kidney disease	20383146	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10794720	GTPBP4///IDI2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1117800-1168600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr10:1118000-1156400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:1118000-1168400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:1118000-1173800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:1122200-1168400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr10:1122600-1168800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:1123000-1168600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:1123200-1178400	Strong transcription	Liver	Liver
9	chr10:1123400-1177800	Strong transcription	Primary B cells from peripheral blood	blood
10	chr10:1124200-1178000	Strong transcription	Primary B cells from cord blood	blood
11	chr10:1127800-1156200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:1127800-1179000	Strong transcription	Fetal Stomach	stomach
13	chr10:1128000-1156400	Strong transcription	Fetal Intestine Small	intestine
14	chr10:1128200-1156200	Strong transcription	Fetal Intestine Large	intestine
15	chr10:1128200-1156400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:1129400-1179000	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr10:1136000-1156400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:1138600-1162800	Strong transcription	Thymus	Thymus
19	chr10:1138600-1178600	Strong transcription	Adipose Nuclei	Adipose
20	chr10:1138800-1159400	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr10:1139200-1156400	Strong transcription	Fetal Muscle Trunk	muscle
22	chr10:1139200-1157200	Strong transcription	Fetal Brain Female	brain
23	chr10:1139600-1156400	Strong transcription	Fetal Thymus	thymus
24	chr10:1139600-1160000	Strong transcription	Skeletal Muscle Female	skeletal muscle
25	chr10:1144800-1232600	Weak transcription	Right Atrium	heart
26	chr10:1146600-1158200	Strong transcription	Rectal Smooth Muscle	rectum
27	chr10:1146800-1158200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:1146800-1167800	Weak transcription	Fetal Heart	heart
29	chr10:1147200-1156400	Strong transcription	Left Ventricle	heart
30	chr10:1148200-1156400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:1149000-1156200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr10:1149000-1157600	Strong transcription	Skeletal Muscle Male	skeletal muscle
33	chr10:1149200-1159800	Strong transcription	HSMMtube	muscle
34	chr10:1149200-1173200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:1149400-1156200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:1149400-1156400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:1149600-1156200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:1149600-1156200	Strong transcription	Right Ventricle	heart
39	chr10:1149600-1173600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:1152600-1157000	Strong transcription	Brain Substantia Nigra	brain
41	chr10:1153000-1165600	Strong transcription	Primary hematopoietic stem cells	blood
42	chr10:1153200-1175000	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr10:1153400-1156400	Strong transcription	HSMM	muscle
44	chr10:1153400-1157000	Strong transcription	Fetal Muscle Leg	muscle
45	chr10:1153800-1156600	Strong transcription	Pancreas	Pancrea
46	chr10:1154000-1158200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr10:1154000-1158400	Weak transcription	Brain Angular Gyrus	brain
48	chr10:1154000-1161000	Weak transcription	Small Intestine	intestine
49	chr10:1154000-1161600	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr10:1154000-1164600	Weak transcription	Fetal Brain Male	brain

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