Variant report

Variant	rs10795105
Chromosome Location	chr10:3997672-3997673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3825924..3829371-chr10:3995503..3998551,3	K562	blood:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11599424	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2031579	0.87[JPT][hapmap]
rs35108768	0.82[ASN][1000 genomes]
rs4607962	0.86[AMR][1000 genomes]
rs4881261	0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs4881262	0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs4881263	0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs4881269	0.88[EUR][1000 genomes]
rs6601787	0.82[ASN][1000 genomes]
rs7079341	0.82[ASN][1000 genomes]
rs7910684	0.82[ASN][1000 genomes]
rs7918069	0.87[JPT][hapmap]
rs943027	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:3981800-4001800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:3990000-3998400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:3991400-3997800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:3991400-3997800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:3993800-4001800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:3996800-3997800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:3996800-3998400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr10:3996800-3998600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr10:3997000-3997800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:3997000-3998600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:3997000-3998800	Enhancers	Fetal Muscle Trunk	muscle
12	chr10:3997200-3998200	Weak transcription	Ovary	ovary
13	chr10:3997400-3998000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr10:3997400-3998000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr10:3997400-3998600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr10:3997400-3998800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr10:3997400-3998800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr10:3997600-3998000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:3997600-3998400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr10:3997600-3998600	Enhancers	H1 Cell Line	embryonic stem cell
21	chr10:3997600-3998600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:3997600-3998600	Enhancers	Fetal Muscle Leg	muscle

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