Variant report

Variant	rs4607962
Chromosome Location	chr10:4001748-4001749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3204922..3206523-chr10:3999897..4002754,2	K562	blood:
2	chr10:3988530..3991271-chr10:4000860..4003144,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10751947	0.92[ASN][1000 genomes]
rs10751948	0.92[ASN][1000 genomes]
rs10751949	0.89[ASN][1000 genomes]
rs10751950	0.89[ASN][1000 genomes]
rs10751951	0.82[ASN][1000 genomes]
rs10795105	0.82[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes]
rs10795106	0.92[ASN][1000 genomes]
rs10795107	0.92[ASN][1000 genomes]
rs10795108	0.92[ASN][1000 genomes]
rs10795109	0.92[ASN][1000 genomes]
rs10795110	0.91[ASN][1000 genomes]
rs10795111	0.91[ASN][1000 genomes]
rs10795112	0.91[ASN][1000 genomes]
rs10795113	0.91[ASN][1000 genomes]
rs10795114	0.89[ASN][1000 genomes]
rs10904149	0.99[ASN][1000 genomes]
rs10904151	0.92[ASN][1000 genomes]
rs10904152	0.92[ASN][1000 genomes]
rs10904154	0.92[ASN][1000 genomes]
rs10904155	0.92[ASN][1000 genomes]
rs10904156	0.92[ASN][1000 genomes]
rs10904157	0.92[ASN][1000 genomes]
rs10904158	0.92[ASN][1000 genomes]
rs10904159	0.92[ASN][1000 genomes]
rs10904160	0.92[ASN][1000 genomes]
rs10904161	0.91[ASN][1000 genomes]
rs10904162	0.91[ASN][1000 genomes]
rs11252211	0.83[ASN][1000 genomes]
rs11252221	0.91[ASN][1000 genomes]
rs11252224	0.91[ASN][1000 genomes]
rs11252225	0.91[ASN][1000 genomes]
rs11252229	0.91[ASN][1000 genomes]
rs11598382	0.92[ASN][1000 genomes]
rs11599424	0.84[AMR][1000 genomes]
rs12268528	0.91[ASN][1000 genomes]
rs12570958	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12781474	0.84[ASN][1000 genomes]
rs2031579	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs35108768	0.89[ASN][1000 genomes]
rs4881261	0.87[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4881262	0.87[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4881263	0.87[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4881264	0.93[ASN][1000 genomes]
rs4881265	0.91[ASN][1000 genomes]
rs4881266	0.92[ASN][1000 genomes]
rs6601787	0.89[ASN][1000 genomes]
rs6601790	0.83[ASN][1000 genomes]
rs67630759	0.81[AMR][1000 genomes]
rs7074793	0.81[ASN][1000 genomes]
rs7079128	0.92[ASN][1000 genomes]
rs7079341	0.89[ASN][1000 genomes]
rs7089266	0.83[ASN][1000 genomes]
rs7094696	0.91[ASN][1000 genomes]
rs7096204	0.92[ASN][1000 genomes]
rs7894640	0.91[ASN][1000 genomes]
rs7896628	0.83[ASN][1000 genomes]
rs7897103	0.83[ASN][1000 genomes]
rs7910684	0.89[ASN][1000 genomes]
rs7917286	0.92[ASN][1000 genomes]
rs7918069	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs943027	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:3981800-4001800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:3993800-4001800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr10:3998000-4002800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr10:3998600-4001800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:3998600-4001800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:3998600-4002000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:3998600-4002000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:3998600-4002000	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:3998800-4001800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:3998800-4001800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr10:3998800-4002000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:3998800-4003400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr10:3999000-4002000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:4000600-4001800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:4000600-4001800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:4000800-4002000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:4001200-4006000	Enhancers	Primary T cells fromperipheralblood	blood
18	chr10:4001200-4006200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:4001400-4004200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr10:4001600-4001800	Bivalent Enhancer	K562	blood
21	chr10:4001600-4003200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:4001600-4003600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr10:4001600-4003600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr10:4001600-4003600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:4001600-4003800	Enhancers	Primary B cells from cord blood	blood
26	chr10:4001600-4004000	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr10:4001600-4004000	Enhancers	Primary B cells from peripheral blood	blood
28	chr10:4001600-4004200	Enhancers	H1 Cell Line	embryonic stem cell
29	chr10:4001600-4004200	Flanking Active TSS	Dnd41	blood

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