Variant report

Variant	rs12570958
Chromosome Location	chr10:4029215-4029216
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4027807..4029524-chr10:4032130..4034992,2	MCF-7	breast:
2	chr10:4027244..4030935-chr10:4035153..4038693,4	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10751947	0.93[ASN][1000 genomes]
rs10751948	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10751949	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10751950	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10751951	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10795106	0.93[ASN][1000 genomes]
rs10795107	0.93[ASN][1000 genomes]
rs10795108	0.93[ASN][1000 genomes]
rs10795109	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10795110	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10795111	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10795112	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10795113	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10795114	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904149	0.88[ASN][1000 genomes]
rs10904151	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10904152	0.93[ASN][1000 genomes]
rs10904154	0.93[ASN][1000 genomes]
rs10904155	0.93[ASN][1000 genomes]
rs10904156	0.93[ASN][1000 genomes]
rs10904157	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10904158	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10904159	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10904160	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10904161	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10904162	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11252221	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11252224	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11252225	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11252229	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11598225	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11598382	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12268528	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12571162	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12781474	0.88[ASN][1000 genomes]
rs2031579	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35108768	0.82[ASN][1000 genomes]
rs4607962	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4881261	0.82[ASN][1000 genomes]
rs4881262	0.82[ASN][1000 genomes]
rs4881263	0.82[ASN][1000 genomes]
rs4881264	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4881265	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4881266	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4881269	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6601787	0.82[ASN][1000 genomes]
rs6601790	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67630759	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7074793	0.84[ASN][1000 genomes]
rs7079128	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7079341	0.82[ASN][1000 genomes]
rs7089266	0.87[ASN][1000 genomes]
rs7089590	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7094696	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7096204	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7894640	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7896628	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7897103	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7910684	0.82[ASN][1000 genomes]
rs7917286	0.93[ASN][1000 genomes]
rs7918069	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs943027	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv5609	chr10:4002849-4040114	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4020200-4032600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4022200-4036400	Weak transcription	Right Atrium	heart
3	chr10:4022800-4029400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:4027800-4029400	Enhancers	Dnd41	blood
5	chr10:4028200-4029600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr10:4028200-4033800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:4028600-4031600	Weak transcription	Fetal Thymus	thymus
8	chr10:4028800-4032000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:4029000-4029400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:4029200-4029600	Enhancers	Esophagus	oesophagus
11	chr10:4029200-4029800	Enhancers	Left Ventricle	heart
12	chr10:4029200-4029800	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr10:4029200-4030400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:4029200-4030600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:4029200-4031200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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