Variant report

Variant	rs12571162
Chromosome Location	chr10:4035123-4035124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10795105	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs11598225	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12570958	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2031579	0.82[CEU][hapmap];0.95[JPT][hapmap]
rs4881261	0.82[CEU][hapmap];0.91[JPT][hapmap]
rs4881262	0.90[JPT][hapmap]
rs4881263	0.81[CEU][hapmap];0.90[JPT][hapmap]
rs4881269	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67630759	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7918069	0.85[CEU][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs943027	0.96[CEU][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv5609	chr10:4002849-4040114	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4022200-4036400	Weak transcription	Right Atrium	heart
2	chr10:4030200-4037600	Weak transcription	HUVEC	blood vessel
3	chr10:4030600-4036200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:4030600-4037400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:4031200-4037000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:4032200-4037600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:4032600-4036800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:4033600-4036000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr10:4034000-4035600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:4034000-4035800	Enhancers	Placenta	Placenta
11	chr10:4034200-4035600	Enhancers	Ovary	ovary
12	chr10:4034400-4035800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:4034600-4035200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr10:4034600-4035800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:4034800-4035200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:4034800-4035200	Bivalent Enhancer	HepG2	liver
17	chr10:4034800-4035400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:4035000-4035800	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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