Variant report

Variant	rs11598225
Chromosome Location	chr10:4031063-4031064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10751946	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10751947	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10751948	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10751949	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10751950	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10751951	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10795106	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10795107	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10795108	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10795109	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10795110	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10795111	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10795112	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10795113	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10795114	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10904149	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10904151	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10904152	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10904154	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10904155	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10904156	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10904157	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10904158	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10904159	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10904160	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10904161	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10904162	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11252221	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11252224	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11252225	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11252229	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11598382	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12268528	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12570958	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12571162	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12781474	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2031579	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35108768	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4881261	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4881262	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4881263	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4881264	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4881265	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4881266	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4881269	0.99[ASN][1000 genomes]
rs6601787	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6601790	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67630759	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7074793	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7079128	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7079341	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7089266	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7089590	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7094696	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7096204	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7894640	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7896628	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7897103	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7910684	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7917286	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7918069	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv5609	chr10:4002849-4040114	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4020200-4032600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4022200-4036400	Weak transcription	Right Atrium	heart
3	chr10:4028200-4033800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:4028600-4031600	Weak transcription	Fetal Thymus	thymus
5	chr10:4028800-4032000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:4029200-4031200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:4029600-4031200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:4029600-4034000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:4030200-4037600	Weak transcription	HUVEC	blood vessel
10	chr10:4030600-4036200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:4030600-4037400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:4031000-4031800	Enhancers	Primary hematopoietic stem cells	blood

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