Variant report

Variant	rs10795199
Chromosome Location	chr10:4766939-4766940
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11252691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133449	0.82[AMR][1000 genomes]
rs1901637	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4749200-4769400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:4760400-4767800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:4762400-4768800	Enhancers	NHDF-Ad	bronchial
4	chr10:4762600-4767200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:4764400-4767400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:4764400-4767800	Weak transcription	NH-A	brain
7	chr10:4764400-4768400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:4764800-4767400	Weak transcription	Osteobl	bone
9	chr10:4765400-4767800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:4765600-4767800	Weak transcription	NHLF	lung
11	chr10:4765800-4767200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:4765800-4768200	Weak transcription	HMEC	breast
13	chr10:4766000-4767200	Enhancers	A549	lung
14	chr10:4766200-4767200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr10:4766600-4767800	Weak transcription	NHEK	skin
16	chr10:4766600-4768200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:4766800-4767800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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