Variant report

Variant	rs11252691
Chromosome Location	chr10:4776216-4776217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4690190..4692263-chr10:4776105..4778922,2	MCF-7	breast:
2	chr10:4727830..4729857-chr10:4775467..4777003,2	MCF-7	breast:
3	chr10:4774392..4777197-chr10:4807926..4810361,3	MCF-7	breast:
4	chr10:4702078..4707095-chr10:4773802..4779822,17	MCF-7	breast:
5	chr10:4702582..4706500-chr10:4772852..4778695,11	MCF-7	breast:
6	chr10:4761428..4765181-chr10:4774344..4777654,4	MCF-7	breast:
7	chr10:4711824..4713897-chr10:4774936..4777024,2	MCF-7	breast:
8	chr10:4776186..4778404-chr10:4806346..4808208,2	MCF-7	breast:
9	chr10:4773770..4776982-chr10:4789881..4792527,4	MCF-7	breast:
10	chr10:4775533..4777498-chr10:4789068..4791596,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10795199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133449	0.82[AMR][1000 genomes]
rs1901637	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4774800-4776400	Enhancers	Placenta	Placenta
2	chr10:4774800-4776400	Enhancers	HMEC	breast
3	chr10:4775200-4776400	Enhancers	Stomach Mucosa	stomach
4	chr10:4775200-4776400	Enhancers	Hela-S3	cervix
5	chr10:4775400-4776400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:4775400-4776400	Enhancers	HepG2	liver
7	chr10:4775400-4776400	Enhancers	HUVEC	blood vessel
8	chr10:4775800-4776400	Enhancers	Esophagus	oesophagus
9	chr10:4775800-4776400	Enhancers	NHEK	skin
10	chr10:4775800-4776800	Enhancers	Placenta Amnion	Placenta Amnion
11	chr10:4776000-4778800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:4776200-4776600	Enhancers	A549	lung
13	chr10:4776200-4778200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr10:4776200-4778600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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