Variant report

Variant	rs10798007
Chromosome Location	chr1:185300823-185300824
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185285397..185289190-chr1:185299692..185306897,6	K562	blood:
2	chr1:185284226..185288398-chr1:185298111..185303024,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273004	Chromatin interaction
ENSG00000116679	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10494582	0.82[ASN][1000 genomes]
rs11804954	0.82[ASN][1000 genomes]
rs12240005	0.82[ASN][1000 genomes]
rs16823862	0.82[ASN][1000 genomes]
rs16823869	0.82[ASN][1000 genomes]
rs16823875	0.82[ASN][1000 genomes]
rs16823884	0.82[ASN][1000 genomes]
rs16823891	0.82[ASN][1000 genomes]
rs35086329	0.87[EUR][1000 genomes]
rs3766713	0.82[ASN][1000 genomes]
rs3766716	0.82[ASN][1000 genomes]
rs3895195	0.87[ASN][1000 genomes]
rs57927210	0.88[ASN][1000 genomes]
rs57960155	0.87[ASN][1000 genomes]
rs58031282	0.82[ASN][1000 genomes]
rs58292874	0.82[ASN][1000 genomes]
rs59035619	0.82[ASN][1000 genomes]
rs59227355	0.88[ASN][1000 genomes]
rs59611551	0.82[ASN][1000 genomes]
rs60064915	0.82[ASN][1000 genomes]
rs61573899	0.82[ASN][1000 genomes]
rs6672580	0.88[ASN][1000 genomes]
rs6679946	0.82[ASN][1000 genomes]
rs6687946	0.87[ASN][1000 genomes]
rs7515757	0.82[ASN][1000 genomes]
rs7516303	0.82[ASN][1000 genomes]
rs7555243	0.88[ASN][1000 genomes]
rs953702	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001323	chr1:184525419-185315876	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv535222	chr1:184525419-185315876	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	esv2756872	chr1:185293197-185345771	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv2758981	chr1:185293197-185345771	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185295000-185302200	Weak transcription	K562	blood
2	chr1:185298400-185305200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr1:185299800-185303000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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