Variant report

Variant	rs59227355
Chromosome Location	chr1:185291664-185291665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185291465..185294333-chr1:185294415..185297743,3	K562	blood:
2	chr1:185277050..185278845-chr1:185289867..185292648,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10489582	1.00[EUR][1000 genomes]
rs10494582	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10798007	0.88[ASN][1000 genomes]
rs11804954	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11807870	1.00[AFR][1000 genomes]
rs12026308	1.00[EUR][1000 genomes]
rs12240005	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12240119	0.81[AMR][1000 genomes]
rs12403604	1.00[EUR][1000 genomes]
rs16823862	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16823869	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16823875	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16823884	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16823891	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2025228	1.00[EUR][1000 genomes]
rs3766713	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3766716	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3895195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41377350	1.00[EUR][1000 genomes]
rs57927210	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57960155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58031282	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58292874	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58685423	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59035619	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59611551	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59818790	1.00[EUR][1000 genomes]
rs60064915	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61537994	1.00[EUR][1000 genomes]
rs61573899	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6672580	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6679946	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6687946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6698620	1.00[EUR][1000 genomes]
rs73053929	0.94[AFR][1000 genomes]
rs7515757	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7516303	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7540216	1.00[EUR][1000 genomes]
rs7555243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs953701	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs953702	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001323	chr1:184525419-185315876	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv535222	chr1:184525419-185315876	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185287600-185298200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr1:185287800-185298200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:185288200-185291800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:185288200-185292800	Weak transcription	HepG2	liver
5	chr1:185288400-185294400	Weak transcription	Fetal Heart	heart
6	chr1:185290000-185291800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr1:185291400-185291800	Enhancers	Fetal Brain Female	brain
8	chr1:185291600-185294400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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