Variant report

Variant	rs59818790
Chromosome Location	chr1:185392802-185392803
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10494582	1.00[EUR][1000 genomes]
rs11804954	1.00[EUR][1000 genomes]
rs12240005	1.00[EUR][1000 genomes]
rs12403604	1.00[EUR][1000 genomes]
rs16823862	1.00[EUR][1000 genomes]
rs16823869	1.00[EUR][1000 genomes]
rs16823875	1.00[EUR][1000 genomes]
rs16823884	1.00[EUR][1000 genomes]
rs16823891	1.00[EUR][1000 genomes]
rs2025228	1.00[EUR][1000 genomes]
rs3766713	1.00[EUR][1000 genomes]
rs3766716	1.00[EUR][1000 genomes]
rs3895195	1.00[EUR][1000 genomes]
rs57927210	1.00[EUR][1000 genomes]
rs57960155	1.00[EUR][1000 genomes]
rs58031282	1.00[EUR][1000 genomes]
rs58685423	1.00[EUR][1000 genomes]
rs59035619	1.00[EUR][1000 genomes]
rs59227355	1.00[EUR][1000 genomes]
rs59611551	1.00[EUR][1000 genomes]
rs60064915	1.00[EUR][1000 genomes]
rs61573899	1.00[EUR][1000 genomes]
rs6672580	1.00[EUR][1000 genomes]
rs6679946	1.00[EUR][1000 genomes]
rs6687946	1.00[EUR][1000 genomes]
rs6698620	1.00[EUR][1000 genomes]
rs7516303	1.00[EUR][1000 genomes]
rs7540216	1.00[EUR][1000 genomes]
rs7555243	1.00[EUR][1000 genomes]
rs953701	1.00[EUR][1000 genomes]
rs953702	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185382800-185394000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:185391200-185393400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr1:185391400-185396400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr1:185391600-185395600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:185392000-185393000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:185392400-185393000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr1:185392600-185393000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:185392800-185393000	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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