The 2.0 version of rSNPBase

Variant report

Variant rs2025228
Chromosome Location chr1:185172560-185172561
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:185127400-185192000 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:185127600-185184600 Weak transcription Psoas Muscle Psoas
3 chr1:185127600-185218200 Weak transcription Right Ventricle heart
4 chr1:185128400-185193800 Weak transcription Brain Angular Gyrus brain
5 chr1:185128400-185201800 Weak transcription Gastric stomach
6 chr1:185131600-185173000 Weak transcription Brain Substantia Nigra brain
7 chr1:185134600-185193200 Weak transcription Brain Inferior Temporal Lobe brain
8 chr1:185137200-185177200 Weak transcription Primary B cells from cord blood blood
9 chr1:185137200-185191400 Weak transcription Brain Anterior Caudate brain
10 chr1:185137400-185177400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr1:185137400-185191200 Weak transcription Brain Hippocampus Middle brain
12 chr1:185137400-185191400 Weak transcription Skeletal Muscle Male skeletal muscle
13 chr1:185138000-185182200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr1:185138000-185186200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
15 chr1:185138000-185204000 Weak transcription Colon Smooth Muscle Colon
16 chr1:185139600-185177400 Weak transcription Fetal Kidney kidney
17 chr1:185139800-185191400 Weak transcription Duodenum Smooth Muscle Duodenum
18 chr1:185140000-185190800 Weak transcription Primary B cells from peripheral blood blood
19 chr1:185140000-185191600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
20 chr1:185144800-185181200 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr1:185145000-185182400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr1:185145200-185191400 Weak transcription Stomach Smooth Muscle stomach
23 chr1:185148400-185193400 Weak transcription Fetal Thymus thymus
24 chr1:185151000-185193200 Weak transcription Primary T regulatory cells fromperipheralblood blood
25 chr1:185152200-185200800 Weak transcription Primary T cells fromperipheralblood blood
26 chr1:185153200-185191600 Weak transcription Aorta Aorta
27 chr1:185154400-185191600 Weak transcription Ovary ovary
28 chr1:185158600-185176400 Weak transcription Fetal Adrenal Gland Adrenal Gland
29 chr1:185159600-185177600 Weak transcription Skeletal Muscle Female skeletal muscle
30 chr1:185160000-185192600 Weak transcription Pancreatic Islets Pancreatic Islet
31 chr1:185160600-185191600 Weak transcription Brain Germinal Matrix brain
32 chr1:185160800-185192000 Weak transcription Rectal Mucosa Donor 29 rectum
33 chr1:185161800-185191400 Weak transcription Primary T helper cells fromperipheralblood blood
34 chr1:185162000-185190800 Weak transcription Cortex derived primary cultured neurospheres brain
35 chr1:185162200-185173800 Weak transcription Breast Myoepithelial Primary Cells Breast
36 chr1:185163600-185190600 Weak transcription Placenta Placenta
37 chr1:185167400-185174600 Weak transcription Fetal Lung lung
38 chr1:185167600-185174800 Weak transcription Duodenum Mucosa Duodenum
39 chr1:185167600-185177400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr1:185167600-185177600 Weak transcription Liver Liver
41 chr1:185167800-185182200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr1:185168000-185201800 Weak transcription Primary T cells from cord blood blood
43 chr1:185168200-185191400 Weak transcription Fetal Muscle Trunk muscle
44 chr1:185168400-185192200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr1:185169400-185177800 Weak transcription Primary hematopoietic stem cells short term culture blood
46 chr1:185170000-185179600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr1:185170400-185174400 Weak transcription Fetal Stomach stomach
48 chr1:185170400-185192000 Weak transcription Fetal Intestine Large intestine
49 chr1:185170800-185174400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
50 chr1:185170800-185191600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015